nf-core / rnaseqLinks
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
☆1,197Updated this week
Alternatives and similar repositories for rnaseq
Users that are interested in rnaseq are comparing it to the libraries listed below
Sorting:
- RNAseq analysis notes from Ming Tang☆1,068Updated 4 years ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,419Updated 3 weeks ago
- MACS -- Model-based Analysis of ChIP-Seq☆768Updated last week
- ChIP-seq analysis notes from Ming Tang☆839Updated last year
- python module to plot beautiful and highly customizable genome browser tracks☆862Updated last year
- A list of interesting genome browser and genome visualization programs☆1,047Updated last week
- Near-optimal RNA-Seq quantification☆721Updated 3 weeks ago
- Trinity RNA-Seq de novo transcriptome assembly☆881Updated last year
- ☆408Updated 4 years ago
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆546Updated this week
- Phylogenetic orthology inference for comparative genomics☆829Updated 6 months ago
- Bioinformatics code libraries and scripts☆555Updated 6 months ago
- Differential expression of RNA-seq data using the Negative Binomial☆445Updated 2 months ago
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆1,414Updated 2 years ago
- Tools to process and analyze deep sequencing data.☆752Updated 6 months ago
- Bioinformatics one liners from Ming Tang☆501Updated 5 years ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆539Updated 2 weeks ago
- A quality control analysis tool for high throughput sequencing data☆580Updated last month
- Tools for handling Unique Molecular Identifiers in NGS data sets☆536Updated last week
- ☆646Updated 3 weeks ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,277Updated 2 weeks ago
- A repository for setting up a RNAseq workflow☆451Updated 8 years ago
- Toolkit for processing sequences in FASTA/Q formats☆1,526Updated 8 months ago
- bedtools - the swiss army knife for genome arithmetic☆1,022Updated 11 months ago
- List of software packages for multi-omics analysis☆890Updated 2 weeks ago
- A list of useful bioinformatics resources☆623Updated 9 months ago
- Fast genome-wide functional annotation through orthology assignment☆697Updated 7 months ago
- ENCODE ATAC-seq pipeline☆446Updated last year
- A tool to find sequencing data and metadata from public databases.☆593Updated last year
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆859Updated last year