nf-core / rnaseqLinks
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
☆1,173Updated last week
Alternatives and similar repositories for rnaseq
Users that are interested in rnaseq are comparing it to the libraries listed below
Sorting:
- RNAseq analysis notes from Ming Tang☆1,058Updated 4 years ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,400Updated this week
- ChIP-seq analysis notes from Ming Tang☆836Updated last year
- MACS -- Model-based Analysis of ChIP-Seq☆763Updated last month
- A list of interesting genome browser and genome visualization programs☆1,042Updated this week
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆529Updated last week
- A repository for setting up a RNAseq workflow☆448Updated 8 years ago
- ☆404Updated 3 years ago
- Trinity RNA-Seq de novo transcriptome assembly☆879Updated 10 months ago
- Toolkit for processing sequences in FASTA/Q formats☆1,518Updated 6 months ago
- python module to plot beautiful and highly customizable genome browser tracks☆857Updated last year
- Bioinformatics code libraries and scripts☆552Updated 5 months ago
- Bioinformatics one liners from Ming Tang☆500Updated 5 years ago
- Near-optimal RNA-Seq quantification☆712Updated last month
- Tools to process and analyze deep sequencing data.☆750Updated 5 months ago
- Phylogenetic orthology inference for comparative genomics☆821Updated 5 months ago
- Differential expression of RNA-seq data using the Negative Binomial☆430Updated 3 weeks ago
- Scripts to download genomes from the NCBI FTP servers☆1,053Updated 5 months ago
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆1,410Updated 2 years ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆536Updated 3 months ago
- A list of useful bioinformatics resources☆619Updated 7 months ago
- Tools for handling Unique Molecular Identifiers in NGS data sets☆535Updated 5 months ago
- Fast genome-wide functional annotation through orthology assignment☆682Updated 6 months ago
- List of software packages for multi-omics analysis☆882Updated 2 months ago
- A tool to find sequencing data and metadata from public databases.☆591Updated last year
- ☆443Updated 5 years ago
- ☆637Updated 3 weeks ago
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆855Updated last year
- A quality control analysis tool for high throughput sequencing data☆561Updated last week
- Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023☆512Updated last year