Tools for analyzing DNA methylation data
☆47Oct 21, 2026Updated last week
Alternatives and similar repositories for dnmtools
Users that are interested in dnmtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Aug 14, 2026Updated 2 months ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Oct 7, 2022Updated 4 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Jul 5, 2019Updated 7 years ago
- An R package for estimating library complexity☆13Aug 25, 2026Updated 2 months ago
- BS-seq analysis pipeline☆47Mar 28, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Riborex: Fast and flexible identification of differential translation from Ribo-seq data☆12Apr 9, 2021Updated 5 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Jun 16, 2021Updated 5 years ago
- Bioconductor package for analysis of methylation data from Illumina's Infinium HumanMethylation arrays.☆15Mar 3, 2025Updated last year
- R package for DNA methylation analysis☆267Jul 15, 2026Updated 3 months ago
- Papillomavirus genome annotation tool☆10May 2, 2023Updated 3 years ago
- Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)☆55Aug 25, 2025Updated last year
- ☆12Mar 12, 2024Updated 2 years ago
- Updated and optimized fork of BSMAP☆24Dec 28, 2020Updated 5 years ago
- Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis f…☆21Nov 19, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair☆201Updated this week
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆43Sep 30, 2026Updated 3 weeks ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆40Oct 1, 2026Updated 3 weeks ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Jan 28, 2022Updated 4 years ago
- An R for fast and flexible DNA methylation analysis☆36Jul 21, 2026Updated 3 months ago
- BISulfite-seq CUI Toolkit☆70Jul 18, 2026Updated 3 months ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆199Apr 19, 2026Updated 6 months ago
- Differential methylation: Easy, Fast, Identification and ANnoTation☆19Dec 18, 2020Updated 5 years ago
- SCREW: A Reproducible Workflow for Single-Cell Epigenomics☆11Oct 22, 2017Updated 9 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆10Jan 15, 2020Updated 6 years ago
- Analyses of Ribo-seq rRNA fragments for Differential Ribosome Heterogeneity and Collision predictions☆17Oct 13, 2026Updated 2 weeks ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆468Oct 13, 2026Updated 2 weeks ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32May 11, 2026Updated 5 months ago
- A segmentation approach to analyze DNA methylation patterns and identify differentially methylation regions from whole-genome datasets☆22Sep 3, 2026Updated last month
- RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data☆24Oct 3, 2016Updated 10 years ago
- ☆13Aug 6, 2025Updated last year
- call copy number from WES(WXS)☆12May 10, 2021Updated 5 years ago
- rnalib: a python-based transcriptomics library☆14Jul 27, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python package to analyze DNA methylation data☆46Oct 17, 2026Updated last week
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Oct 2, 2026Updated 3 weeks ago
- Cluster-based analysis of CpG methylation☆13Jan 11, 2024Updated 2 years ago
- All codes associated with MendelPeaG2P project☆13Mar 5, 2025Updated last year
- allele specific DNA methylation haplotype region☆13Oct 18, 2023Updated 3 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Jun 13, 2023Updated 3 years ago
- In this module, you will learn how to download raw sequence data, calculate differentially methylated regions, and run a canonical methyl…☆18Jun 6, 2025Updated last year