smithlabcode / dnmtoolsLinks
Tools for analyzing DNA methylation data
☆43Updated last week
Alternatives and similar repositories for dnmtools
Users that are interested in dnmtools are comparing it to the libraries listed below
Sorting:
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- QDNAseq package for Bioconductor☆50Updated last year
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆87Updated 9 months ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 5 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆78Updated 3 years ago
- FEELnc : FlExible Extraction of LncRNA☆90Updated 2 weeks ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 6 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 9 months ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- ☆58Updated 2 weeks ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆67Updated 2 weeks ago
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- A software for calculating telomere length☆70Updated 6 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- ☆38Updated 4 years ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆57Updated 4 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 4 months ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 6 months ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆68Updated last year
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- ☆69Updated 2 years ago
- BISulfite-seq CUI Toolkit☆65Updated 6 months ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- ☆45Updated 2 years ago