Tools for analyzing DNA methylation data
☆48May 18, 2026Updated 4 months ago
Alternatives and similar repositories for dnmtools
Users that are interested in dnmtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Aug 14, 2026Updated last month
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Oct 7, 2022Updated 4 years ago
- An R package for estimating library complexity☆13Aug 25, 2026Updated last month
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Jul 5, 2019Updated 7 years ago
- BS-seq analysis pipeline☆47Mar 28, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Jun 16, 2021Updated 5 years ago
- R package for DNA methylation analysis☆264Jul 15, 2026Updated 2 months ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆40Oct 1, 2026Updated last week
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair☆199Updated this week
- An R for fast and flexible DNA methylation analysis☆36Jul 21, 2026Updated 2 months ago
- BISulfite-seq CUI Toolkit☆70Jul 18, 2026Updated 2 months ago
- SCREW: A Reproducible Workflow for Single-Cell Epigenomics☆11Oct 22, 2017Updated 8 years ago
- Differential methylation: Easy, Fast, Identification and ANnoTation☆19Dec 18, 2020Updated 5 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32May 11, 2026Updated 4 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Bioconductor package for analysis of methylation data from Illumina's Infinium HumanMethylation arrays.☆15Mar 3, 2025Updated last year
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆467Updated this week
- Riborex: Fast and flexible identification of differential translation from Ribo-seq data☆12Apr 9, 2021Updated 5 years ago
- GeneDMRs is an R package to detect the differentially methylated regions based on genes, gene body, CpG islands and gene body interacted …☆10Nov 18, 2023Updated 2 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Oct 2, 2026Updated last week
- ☆13Aug 6, 2025Updated last year
- Updated and optimized fork of BSMAP☆24Dec 28, 2020Updated 5 years ago
- BISulfite-seq CUI Toolkit☆30Updated this week
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Jun 13, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- allele specific DNA methylation haplotype region☆13Oct 18, 2023Updated 2 years ago
- ☆11Apr 22, 2022Updated 4 years ago
- ☆14Mar 26, 2024Updated 2 years ago
- ☆15Aug 25, 2022Updated 4 years ago
- Cluster-based analysis of CpG methylation☆13Jan 11, 2024Updated 2 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆199Apr 19, 2026Updated 5 months ago
- Tools and Data related to Enzymatic Methylation Sequencing☆36Oct 1, 2026Updated last week
- ☆19Feb 15, 2024Updated 2 years ago
- Dfam Transposable Element Tools Docker container.☆107Jun 11, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)☆55Aug 25, 2025Updated last year
- ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data☆90May 23, 2026Updated 4 months ago
- ☆42Apr 15, 2021Updated 5 years ago
- 🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips☆84Sep 23, 2026Updated 2 weeks ago
- Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis f…☆21Nov 19, 2020Updated 5 years ago
- A program for summarising CpG methylation patterns☆20Sep 9, 2016Updated 10 years ago
- Transposable Element Finder - Detection of active transposable elements from NGS data☆10Apr 14, 2026Updated 5 months ago