smithlabcode / dnmtoolsLinks
Tools for analyzing DNA methylation data
☆44Updated 3 weeks ago
Alternatives and similar repositories for dnmtools
Users that are interested in dnmtools are comparing it to the libraries listed below
Sorting:
- ☆60Updated 6 months ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Updated 3 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 6 months ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated 3 weeks ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Updated 6 years ago
- ☆49Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆123Updated 2 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆84Updated 4 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆67Updated 2 years ago
- Tumor Mutational Burden☆63Updated this week
- ☆75Updated 2 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆87Updated last year
- Allele-specific alignment sorting☆61Updated 3 years ago
- ☆39Updated 4 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆40Updated last year
- ⛏ HLA predictions from NGS shotgun data☆55Updated 8 months ago
- Genomic Association Tester☆35Updated 2 years ago
- Tutorial Website☆63Updated 5 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆37Updated 4 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆65Updated last year
- piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School☆63Updated 7 months ago
- QDNAseq package for Bioconductor☆54Updated last year
- tools to find circRNAs in RNA-seq data☆45Updated 8 years ago
- ☆50Updated 4 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆49Updated 7 years ago