nloyfer / wgbs_toolsLinks
tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
☆171Updated 5 months ago
Alternatives and similar repositories for wgbs_tools
Users that are interested in wgbs_tools are comparing it to the libraries listed below
Sorting:
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆146Updated 2 years ago
- Check strandedness of RNA-Seq fastq files☆125Updated 3 years ago
- Generate IGV style locus tracks from bigWig files in R☆172Updated 11 months ago
- ☆153Updated 5 months ago
- Detecting sites of genomic enrichment☆194Updated 2 years ago
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- Fast alignment and preprocessing of chromatin profiles☆206Updated last month
- A short tutorial on how to use RSEM☆138Updated 5 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆118Updated 2 weeks ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆155Updated last year
- release version☆54Updated 3 years ago
- ASCAT R package☆189Updated last month
- fork of RSeQC python RNAseq metrics suit of tools☆49Updated 6 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆154Updated last year
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆103Updated last month
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆265Updated last month
- ☆155Updated 2 years ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆190Updated last year
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆115Updated 2 years ago
- Publication quality NGS track plotting☆114Updated 2 weeks ago
- Microsatellite instability (MSI) detection for tumor only data.☆110Updated last year
- Finder of Somatic Fusion Genes in RNA-seq data☆147Updated last month
- Software program for checking sample matching for NGS data☆137Updated last year
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆141Updated 2 months ago
- ☆141Updated 6 years ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆155Updated this week
- A (mostly) universal methylation extractor for BS-seq experiments.☆172Updated last year
- ☆116Updated 2 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated 3 months ago