nloyfer / wgbs_toolsLinks
tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
☆174Updated 3 weeks ago
Alternatives and similar repositories for wgbs_tools
Users that are interested in wgbs_tools are comparing it to the libraries listed below
Sorting:
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆146Updated 2 years ago
- Generate IGV style locus tracks from bigWig files in R☆174Updated last year
- Detecting sites of genomic enrichment☆197Updated 2 years ago
- ☆155Updated 6 months ago
- ☆156Updated 3 years ago
- Fast alignment and preprocessing of chromatin profiles☆207Updated 2 months ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆156Updated last year
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- ASCAT R package☆192Updated 2 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆155Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆120Updated this week
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆118Updated 2 years ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆192Updated last year
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆104Updated last week
- RNA-Seq analysis workflow☆105Updated 4 years ago
- Publication quality NGS track plotting☆115Updated last month
- Microsatellite instability (MSI) detection for tumor only data.☆112Updated last year
- FAN-C: Framework for the ANalysis of C-like data☆120Updated last year
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆158Updated 3 weeks ago
- Software program for checking sample matching for NGS data☆136Updated last year
- release version☆54Updated 3 years ago
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 4 months ago
- Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files☆116Updated 4 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆49Updated 6 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Updated 4 years ago
- ☆120Updated 2 years ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆145Updated 3 months ago
- ☆117Updated 2 years ago