R package for DNA methylation analysis
☆267Jul 15, 2026Updated 3 months ago
Alternatives and similar repositories for methylKit
Users that are interested in methylKit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆468Oct 13, 2026Updated 2 weeks ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆181Oct 20, 2026Updated last week
- Optimized DMR analysis based on bimodal normal distribution model and cost function for regional methylation analysis.☆17Sep 13, 2021Updated 5 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Oct 7, 2022Updated 4 years ago
- Devel repository for bsseq☆38Aug 20, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package for genomic feature analysis and visualization☆83Apr 15, 2025Updated last year
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆161Sep 9, 2026Updated last month
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆66May 9, 2025Updated last year
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆148May 20, 2023Updated 3 years ago
- R package for DNA methylation analysis☆21Oct 2, 2026Updated 3 weeks ago
- BS-seq analysis pipeline☆47Mar 28, 2023Updated 3 years ago
- Tools for analyzing DNA methylation data☆47Oct 21, 2026Updated last week
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair☆201Updated this week
- DNA methylation analysis notes from Ming Tang☆96Sep 19, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A versatile aligning pipeline for bisulfite sequencing data☆69Oct 30, 2018Updated 8 years ago
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 7 years ago
- WALT is a read mapping program for bisulfite sequencing DNA methylation studies.☆18Aug 23, 2022Updated 4 years ago
- ☆19Apr 9, 2026Updated 6 months ago
- An R for fast and flexible DNA methylation analysis☆36Jul 21, 2026Updated 3 months ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆67Dec 22, 2023Updated 2 years ago
- ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data☆90May 23, 2026Updated 5 months ago
- Count bases in BAM/CRAM files☆327Jul 10, 2026Updated 3 months ago
- ☆11Dec 12, 2014Updated 11 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Jan 28, 2022Updated 4 years ago
- Unofficial repo for software vendoring or packaging purposes☆22Oct 23, 2017Updated 9 years ago
- ☆12Mar 12, 2024Updated 2 years ago
- Tools to process and analyze deep sequencing data.☆772Updated this week
- An R package to interpret biological trends from DNA methylation data☆18May 24, 2022Updated 4 years ago
- Bayesian Clustering and Imputation of Single Cell Methylomes☆16Jul 16, 2020Updated 6 years ago
- BISulfite-seq CUI Toolkit☆70Jul 18, 2026Updated 3 months ago
- nucleosome calling using ATAC-seq☆113Dec 20, 2020Updated 5 years ago
- IDR☆179Sep 18, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- DCC/DAC methylation pipeline source☆55Jul 29, 2020Updated 6 years ago
- BEDOPS: high-performance genomic feature operations☆375Apr 29, 2025Updated last year
- Demographic analysis of Brassica oleracea☆10May 19, 2026Updated 5 months ago
- A Sliding Window Approach to Identify Differentially Methylated Regions Based on Whole Genome Bisulfite Sequencing☆14May 22, 2023Updated 3 years ago
- R package for reading in & working with NucleoATAC outputs☆26Oct 13, 2018Updated 8 years ago
- Tool to estimate purity of tumor samples exploiting DNA Methylation data☆12Nov 30, 2022Updated 3 years ago
- MACS -- Model-based Analysis of ChIP-Seq☆789Updated this week