al2na / methylKit
R package for DNA methylation analysis
☆219Updated this week
Alternatives and similar repositories for methylKit:
Users that are interested in methylKit are comparing it to the libraries listed below
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆240Updated last week
- A collection of scripts and notes related to genomics and bioinformatics☆204Updated this week
- ASCAT R package☆174Updated 2 months ago
- A short tutorial on how to use RSEM☆136Updated 4 years ago
- Detecting sites of genomic enrichment☆190Updated last year
- Quick mining and visualization of NGS data by integrating genomic databases☆263Updated last year
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆107Updated 2 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆196Updated this week
- ENCODE Uniform processing pipeline for ChIP-seq☆122Updated 4 years ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆218Updated last year
- ☆146Updated 2 years ago
- RNA-Seq analysis workflow☆104Updated 3 years ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆212Updated 8 months ago
- Application for making ENCODE Blacklists☆288Updated 3 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆206Updated this week
- This Snakemake pipeline implements the GATK best-practices workflow☆247Updated last year
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆306Updated last year
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆138Updated last year
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆261Updated last year
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆157Updated last week
- Web application to explore the Sequence Read Archive.☆209Updated last month
- Fast and accurate gene fusion detection from RNA-Seq data☆232Updated 3 months ago
- SUPPA: Fast quantification of splicing and differential splicing☆268Updated 7 months ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆207Updated 3 weeks ago
- ChIP peak Annotation, Comparison and Visualization☆234Updated last week
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆162Updated 2 months ago
- Generate IGV style locus tracks from bigWig files in R☆154Updated 3 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆142Updated 5 months ago
- A SingleCell RNASeq pre-processing snakemake workflow☆146Updated 2 years ago
- Check strandedness of RNA-Seq fastq files☆119Updated 2 years ago