al2na / methylKitLinks
R package for DNA methylation analysis
☆246Updated last week
Alternatives and similar repositories for methylKit
Users that are interested in methylKit are comparing it to the libraries listed below
Sorting:
- Detecting sites of genomic enrichment☆198Updated 2 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆222Updated 2 months ago
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- ASCAT R package☆195Updated 4 months ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆275Updated 2 months ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆228Updated last year
- SUPPA: Fast quantification of splicing and differential splicing☆292Updated 2 months ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆230Updated 8 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆158Updated last month
- ChIP peak Annotation, Comparison and Visualization☆248Updated 2 months ago
- Quick mining and visualization of NGS data by integrating genomic databases☆268Updated 2 years ago
- Fast and accurate gene fusion detection from RNA-Seq data☆258Updated 4 months ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆230Updated 2 months ago
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆354Updated 7 months ago
- Application for making ENCODE Blacklists☆332Updated 4 years ago
- ☆289Updated 3 months ago
- A collection of scripts and notes related to genomics and bioinformatics☆218Updated last month
- Generate IGV style locus tracks from bigWig files in R☆175Updated last year
- ☆145Updated 7 years ago
- Web application to explore the Sequence Read Archive.☆218Updated 6 months ago
- parallel fastq-dump wrapper☆302Updated 2 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆131Updated 3 weeks ago
- This Snakemake pipeline implements the GATK best-practices workflow☆262Updated 2 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆120Updated 3 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆124Updated 5 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆250Updated last week
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆174Updated last week
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆146Updated 2 years ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆289Updated last year
- RNA-seq workflow using STAR and DESeq2☆351Updated last month