smithlabcode / abismalLinks
Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
☆19Updated last week
Alternatives and similar repositories for abismal
Users that are interested in abismal are comparing it to the libraries listed below
Sorting:
- ☆18Updated 4 years ago
- ☆23Updated 9 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Updated 6 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 7 months ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- ☆17Updated last year
- Workflow for Sequenza, cellularity and ploidy☆20Updated last month
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated last year
- R package for DNA methylation analysis☆19Updated last year
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆18Updated 4 years ago
- mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.☆16Updated last month
- Visualization tool for temporal clonal evolution.☆17Updated 5 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆19Updated 2 years ago
- Two pass alignment for long reads☆22Updated 4 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Updated 2 years ago
- ☆22Updated 2 months ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 5 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing☆21Updated 4 years ago
- ☆20Updated 3 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆15Updated 3 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- ☆13Updated 3 years ago
- Structural variant VCF annotation, duplicate removal and comparison