smithlabcode / abismalLinks
Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
☆18Updated last week
Alternatives and similar repositories for abismal
Users that are interested in abismal are comparing it to the libraries listed below
Sorting:
- ☆22Updated 6 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆11Updated 4 years ago
- Somatic point mutation caller☆29Updated last month
- ☆18Updated 3 years ago
- ☆23Updated 4 years ago
- ☆19Updated 10 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- Enabling differential allele-specific analysis☆11Updated 5 months ago
- ☆13Updated 2 years ago
- ☆13Updated 7 years ago
- ☆28Updated 6 months ago
- Workflow for Sequenza, cellularity and ploidy☆19Updated 2 weeks ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- Transposable Element Finder - Detection of active transposable elements from NGS data☆9Updated 3 weeks ago
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆13Updated last week
- BAMixChecker: A fast and efficient tool for sample matching checkup☆14Updated 3 years ago
- Genomic Association Tester☆31Updated 2 years ago
- ☆19Updated 2 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 9 months ago
- QDNAseq bin annotation for hg38☆15Updated 2 months ago
- Filter and prioritize fusion calls☆20Updated 8 months ago
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 8 years ago
- ☆12Updated 3 weeks ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆28Updated last year
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 9 months ago
- BISulfite-seq CUI Toolkit☆22Updated last month
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated 3 weeks ago