smithlabcode / abismalLinks
Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
☆18Updated 2 weeks ago
Alternatives and similar repositories for abismal
Users that are interested in abismal are comparing it to the libraries listed below
Sorting:
- ☆22Updated 5 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- ☆19Updated 3 years ago
- ☆23Updated 4 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆11Updated 3 years ago
- Workflow for Sequenza, cellularity and ploidy☆18Updated last week
- GENome Organisation Visual Analytics☆15Updated 3 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- ☆12Updated 2 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆28Updated 11 months ago
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆18Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Somatic point mutation caller☆28Updated last month
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- ☆19Updated 2 years ago
- ☆17Updated 10 months ago
- R package for DNA methylation analysis☆18Updated 9 months ago
- ☆28Updated 5 months ago
- ☆19Updated 10 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 10 months ago
- Enabling differential allele-specific analysis☆11Updated 5 months ago
- Long read to rMATS☆31Updated 2 years ago
- Reconstruction of focal amplifications with long reads☆21Updated last week
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆11Updated last month
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated last month
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Readme☆10Updated 5 years ago
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆13Updated last month