nf-core / mag
Assembly and binning of metagenomes
☆232Updated this week
Alternatives and similar repositories for mag:
Users that are interested in mag are comparing it to the libraries listed below
- A tool for generating consensus long-read assemblies for bacterial genomes☆318Updated 10 months ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆143Updated this week
- quality filtering tool for long reads☆326Updated last year
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆333Updated last year
- Genome Assembly and Annotation Service code☆211Updated last year
- An updated pipeline for pangenome investigation☆294Updated last month
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆305Updated last month
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆197Updated last week
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆226Updated 4 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆276Updated 5 months ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆110Updated 2 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆206Updated 4 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆248Updated last month
- Scan contig files against PubMLST typing schemes☆221Updated 2 years ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆187Updated 2 months ago
- Bacterial ribosomal RNA predictor☆239Updated last year
- Finds SNP sites from a multi-FASTA alignment file☆257Updated 4 years ago
- Rapid comparison and dereplication of genomes☆282Updated 3 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆222Updated 2 years ago
- Tool to plot synteny and structural rearrangements between genomes☆302Updated last week
- A tool to circularize genome assemblies☆240Updated last year
- Pan-genome wide association studies☆193Updated 10 months ago
- Filtering and trimming of long read sequencing data☆201Updated 2 years ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆199Updated 7 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆357Updated 3 years ago
- An overview of all nanopack tools☆239Updated last year
- customizable pipeline to identify viral sequences from (meta)genomic data☆244Updated 4 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆367Updated 7 months ago
- Fast and accurately polish the genome generated by long reads.☆220Updated 3 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆500Updated last year