nf-core / magLinks
Assembly and binning of metagenomes
☆249Updated this week
Alternatives and similar repositories for mag
Users that are interested in mag are comparing it to the libraries listed below
Sorting:
- A tool for generating consensus long-read assemblies for bacterial genomes☆333Updated last month
- Scan contig files against PubMLST typing schemes☆250Updated 3 years ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆354Updated 2 months ago
- An updated pipeline for pangenome investigation☆317Updated 7 months ago
- quality filtering tool for long reads☆373Updated last month
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆222Updated last week
- Build a partitioned pangenome graph from microbial genomes☆284Updated last week
- Bacterial ribosomal RNA predictor☆258Updated 2 years ago
- Rapid comparison and dereplication of genomes☆313Updated 4 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆237Updated 2 years ago
- Filtering and trimming of long read sequencing data☆208Updated 2 years ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆322Updated 8 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆242Updated 4 years ago
- A tool to circularize genome assemblies☆248Updated last year
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆224Updated 2 weeks ago
- Tool to plot synteny and structural rearrangements between genomes☆326Updated 6 months ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆167Updated last week
- Eukaryotic Genome Annotation Pipeline☆366Updated 3 months ago
- Finds SNP sites from a multi-FASTA alignment file☆266Updated 4 years ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆271Updated 11 months ago
- A user-friendly workflow for phylogenomics☆221Updated 2 months ago
- Classifier for metagenomic sequences☆266Updated 4 months ago
- ☆216Updated last month
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆392Updated 4 months ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆195Updated last month
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆206Updated last year
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆283Updated last year
- Read alignment statistics for metagenomics☆377Updated last week
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆217Updated last week
- Pan-genome wide association studies☆204Updated last year