christacaggiano / celfieLinks
cfDNA cell type of origin estimation
☆34Updated 2 years ago
Alternatives and similar repositories for celfie
Users that are interested in celfie are comparing it to the libraries listed below
Sorting:
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- ☆53Updated 3 years ago
- ☆31Updated last year
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Irons out wrinkles in noisy coverage data using robust PCA☆15Updated 8 months ago
- An R package to time somatic mutations☆65Updated 5 years ago
- ☆39Updated 4 years ago
- ☆17Updated 7 years ago
- An R package for predicting HR deficiency from mutation contexts☆30Updated 11 months ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- ☆74Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- snakemake workflow for post-processing scATACseq data☆22Updated 5 years ago
- ☆22Updated 2 months ago
- ☆13Updated 8 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆73Updated last year
- A preprocessing and QC pipeline for HiChIP data☆40Updated 3 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- Battenberg R package for subclonal copynumber estimation☆95Updated last month
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 4 months ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆77Updated 2 weeks ago
- HMMRATAC peak caller for ATAC-seq data☆98Updated last year
- Genomic Association Tester☆35Updated 2 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆45Updated 3 weeks ago
- HiC for copy Number variation and Translocation detection☆40Updated 4 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆84Updated 4 years ago
- A flexible framework for nucleosome profiling of cell-free DNA☆28Updated 2 years ago