christacaggiano / celfieLinks
cfDNA cell type of origin estimation
☆32Updated last year
Alternatives and similar repositories for celfie
Users that are interested in celfie are comparing it to the libraries listed below
Sorting:
- ☆31Updated last year
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- ☆50Updated 3 years ago
- Irons out wrinkles in noisy coverage data using robust PCA☆15Updated 4 months ago
- ☆17Updated 6 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- An R package to time somatic mutations☆63Updated 4 years ago
- Enhanced version of the FastQTL QTL mapper☆68Updated 2 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- ☆13Updated 8 years ago
- Battenberg R package for subclonal copynumber estimation☆91Updated 2 months ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- A preprocessing and QC pipeline for HiChIP data☆40Updated 3 years ago
- An R package for predicting HR deficiency from mutation contexts☆29Updated 7 months ago
- RNA-seq workflow: differential transcript usage☆22Updated 2 years ago
- ☆38Updated 4 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- Genomic Association Tester☆32Updated 2 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated last month
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- ☆72Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆59Updated 4 months ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆21Updated last year
- Define regions in the genome☆33Updated 3 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 8 months ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago