christacaggiano / celfieLinks
cfDNA cell type of origin estimation
☆32Updated 2 years ago
Alternatives and similar repositories for celfie
Users that are interested in celfie are comparing it to the libraries listed below
Sorting:
- ☆31Updated last year
- Irons out wrinkles in noisy coverage data using robust PCA☆15Updated 6 months ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- ☆51Updated 3 years ago
- A preprocessing and QC pipeline for HiChIP data☆40Updated 3 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- ☆72Updated 2 years ago
- ☆38Updated 4 years ago
- ☆17Updated 6 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆30Updated 7 months ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.☆41Updated 4 years ago
- An R package for predicting HR deficiency from mutation contexts☆30Updated 9 months ago
- ☆13Updated 8 years ago
- Genomic Association Tester☆33Updated 2 years ago
- ☆39Updated 5 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- An R package to time somatic mutations☆64Updated 4 years ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆34Updated 3 years ago
- R package to work with ctDNA sequencing data☆44Updated 3 years ago
- ☆49Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- DCC/DAC methylation pipeline source☆57Updated 5 years ago
- snakemake workflow for post-processing scATACseq data☆22Updated 5 years ago
- ☆21Updated last month