ChIP-seq peak-calling, QC and differential analysis pipeline.
☆242Jul 27, 2026Updated last week
Alternatives and similar repositories for chipseq
Users that are interested in chipseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ATAC-seq peak-calling and QC analysis pipeline☆226Jul 25, 2026Updated 2 weeks ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,348Updated this week
- Analysis of Chromosome Conformation Capture data (Hi-C)☆111Jul 27, 2026Updated 2 weeks ago
- ENCODE ChIP-seq pipeline☆283Feb 15, 2024Updated 2 years ago
- ChIP-seq analysis notes from Ming Tang☆852Aug 5, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair☆197Jul 27, 2026Updated last week
- Nascent Transcription Processing Pipeline☆23Jul 27, 2026Updated last week
- MACS -- Model-based Analysis of ChIP-Seq☆782Jul 7, 2026Updated last month
- RNA-seq analysis pipeline for detection of gene-fusions☆174Jul 24, 2026Updated 2 weeks ago
- Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-dropl…☆349Updated this week
- MNase-seq analysis pipeline using BWA and DANPOS2.☆13Feb 23, 2026Updated 5 months ago
- UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies☆28Jul 27, 2026Updated 2 weeks ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆113Jul 27, 2026Updated 2 weeks ago
- Intro to ChIPseq using HPC☆324Jan 30, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆590Updated this week
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆95Jul 29, 2026Updated last week
- Pipeline to fetch metadata and raw FastQ files from public databases☆197Jul 27, 2026Updated 2 weeks ago
- Tools to process and analyze deep sequencing data.☆762Updated this week
- A small-RNA sequencing analysis pipeline☆101Jul 27, 2026Updated last week
- circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data☆61Jul 24, 2026Updated 2 weeks ago
- ChIP-seq peak-calling, QC and differential analysis pipeline (Snakemake port of the nextflow pipeline at https://nf-co.re/chipseq).☆26Feb 3, 2022Updated 4 years ago
- Chromatin States Map in mouse embryonic stem cell☆19Apr 11, 2018Updated 8 years ago
- Application for making ENCODE Blacklists☆345Apr 23, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline☆13Dec 2, 2025Updated 8 months ago
- Converts bam or cram files to fastq format and does quality control.☆32Jul 24, 2026Updated 2 weeks ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆18Jan 3, 2019Updated 7 years ago
- Nanopore demultiplexing, QC and alignment pipeline☆227Jul 27, 2026Updated last week
- Precision HLA typing from next-generation sequencing data☆81Jul 31, 2026Updated last week
- Call and score variants from WGS/WES of rare disease patients.☆122Updated this week
- ChIP peak Annotation, Comparison and Visualization☆256Apr 29, 2026Updated 3 months ago
- Short Course to get Bioinformaticians at CRUK-CI up-to-speed on Docker☆13Nov 11, 2016Updated 9 years ago
- k-mer similarity analysis pipeline☆24Jul 27, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ENCODE Uniform processing pipeline for ChIP-seq☆126Mar 23, 2020Updated 6 years ago
- ENCODE ATAC-seq pipeline☆459Jul 18, 2024Updated 2 years ago
- A modular Hi-C mapping pipeline☆105Dec 5, 2024Updated last year
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆443Mar 28, 2024Updated 2 years ago
- A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted nex…☆61Jul 27, 2026Updated 2 weeks ago
- Quick mining and visualization of NGS data by integrating genomic databases☆273May 5, 2023Updated 3 years ago
- Tutorial for AMSI BioInfoSummer 2018☆29Dec 3, 2018Updated 7 years ago