nf-core / chipseqLinks
ChIP-seq peak-calling, QC and differential analysis pipeline.
☆215Updated 3 weeks ago
Alternatives and similar repositories for chipseq
Users that are interested in chipseq are comparing it to the libraries listed below
Sorting:
- ATAC-seq peak-calling and QC analysis pipeline☆201Updated 3 weeks ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆251Updated 3 months ago
- Application for making ENCODE Blacklists☆308Updated 4 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆265Updated 2 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆215Updated 4 months ago
- ☆260Updated 6 months ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆406Updated last year
- Intro to ChIPseq using HPC☆306Updated 2 years ago
- ENCODE ChIP-seq pipeline☆267Updated last year
- RNA-seq workflow using STAR and DESeq2☆341Updated 10 months ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆280Updated 10 months ago
- A collection of scripts and notes related to genomics and bioinformatics☆211Updated last month
- ENCODE ATAC-seq pipeline☆418Updated 10 months ago
- Fast and accurate gene fusion detection from RNA-Seq data☆241Updated 2 months ago
- SUPPA: Fast quantification of splicing and differential splicing☆275Updated 11 months ago
- ☆197Updated 2 months ago
- parallel fastq-dump wrapper☆295Updated 2 years ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆397Updated last week
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆266Updated last year
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆224Updated this week
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆167Updated last week
- ☆151Updated 2 years ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆249Updated 5 months ago
- ASCAT R package☆181Updated 2 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆253Updated last year
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆109Updated 2 years ago
- ☆92Updated 3 weeks ago
- A short tutorial on how to use RSEM☆136Updated 5 years ago
- ☆135Updated 6 years ago
- This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster☆170Updated 4 years ago