FelixKrueger / BismarkLinks
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
☆425Updated 2 months ago
Alternatives and similar repositories for Bismark
Users that are interested in Bismark are comparing it to the libraries listed below
Sorting:
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆514Updated 4 months ago
- RNA-seq workflow using STAR and DESeq2☆342Updated 11 months ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆444Updated last year
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆413Updated last year
- Transcript assembly and quantification for RNA-Seq☆450Updated 3 weeks ago
- parallel fastq-dump wrapper☆298Updated 2 years ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆390Updated 7 months ago
- Application for making ENCODE Blacklists☆313Updated 4 years ago
- Plot structural variant signals from many BAMs and CRAMs☆544Updated last year
- Customizable workflows based on snakemake and python for the analysis of NGS data☆399Updated 3 weeks ago
- This Snakemake pipeline implements the GATK best-practices workflow☆255Updated 2 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆277Updated last year
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆423Updated 6 months ago
- STAR-Fusion codebase☆243Updated 2 weeks ago
- A One-Click System for Analyzing Loop-Resolution Hi-C Experiments☆451Updated 7 months ago
- GTEx & TOPMed data production and analysis pipelines☆374Updated last month
- ☆265Updated 7 months ago
- Fast and accurate gene fusion detection from RNA-Seq data☆244Updated 3 months ago
- Tools for handling Unique Molecular Identifiers in NGS data sets☆515Updated last week
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆271Updated last year
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆457Updated last week
- Strelka2 germline and somatic small variant caller☆375Updated 3 years ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆369Updated last month
- Documentation for the ANNOVAR software☆243Updated 2 weeks ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆475Updated 2 weeks ago
- Intro to ChIPseq using HPC☆309Updated 2 years ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆217Updated last week
- Tools to process and analyze deep sequencing data.☆723Updated this week
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆515Updated last week
- Quick mining and visualization of NGS data by integrating genomic databases☆267Updated 2 years ago