A tool to map bisulfite converted sequence reads and determine cytosine methylation states
☆452Jun 30, 2026Updated this week
Alternatives and similar repositories for Bismark
Users that are interested in Bismark are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for DNA methylation analysis☆255Jan 18, 2026Updated 5 months ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆181Jun 21, 2024Updated 2 years ago
- Consistent adapter and quality trimming for NGS, with extra functionality for RRBS data☆561Jun 27, 2026Updated last week
- ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data☆89May 23, 2026Updated last month
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆159May 2, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆147May 20, 2023Updated 3 years ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair☆193Jun 3, 2026Updated last month
- BISulfite-seq CUI Toolkit☆69Jun 18, 2026Updated 2 weeks ago
- Devel repository for bsseq☆38Feb 6, 2026Updated 4 months ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆526Jun 28, 2026Updated last week
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆193Apr 19, 2026Updated 2 months ago
- Tools for working with SAM/BAM data☆612Dec 22, 2024Updated last year
- ☆18Apr 9, 2026Updated 2 months ago
- BS-seq analysis pipeline☆47Mar 28, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Jul 5, 2019Updated 7 years ago
- Tools to process and analyze deep sequencing data.☆762Jun 24, 2026Updated last week
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,384Jun 29, 2026Updated last week
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆67Dec 22, 2023Updated 2 years ago
- Allele-specific alignment sorting☆62Jan 7, 2023Updated 3 years ago
- MACS -- Model-based Analysis of ChIP-Seq☆779Updated this week
- SeqMonk NGS visualisation and analysis tool☆51Mar 31, 2026Updated 3 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,465Jun 20, 2026Updated 2 weeks ago
- Tools for analyzing DNA methylation data☆46May 18, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A fast and sensitive gapped read aligner☆795Jun 1, 2026Updated last month
- MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data☆40Feb 20, 2019Updated 7 years ago
- DCC/DAC methylation pipeline source☆56Jul 29, 2020Updated 5 years ago
- Graph-based alignment (Hierarchical Graph FM index)☆539Jan 27, 2026Updated 5 months ago
- A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.☆1,066Jun 13, 2026Updated 3 weeks ago
- A versatile aligning pipeline for bisulfite sequencing data☆68Oct 30, 2018Updated 7 years ago
- BEDOPS: high-performance genomic feature operations☆372Apr 29, 2025Updated last year
- Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.☆44Jul 28, 2021Updated 4 years ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆472Apr 21, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Cluster-based analysis of CpG methylation☆13Jan 11, 2024Updated 2 years ago
- Single-cell Bisulfite Sequencing Data Mapping☆13May 19, 2021Updated 5 years ago
- bedtools - the swiss army knife for genome arithmetic☆1,040Jun 10, 2026Updated 3 weeks ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆63May 9, 2025Updated last year
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆235Feb 17, 2022Updated 4 years ago
- RNA-seq aligner☆2,216Mar 18, 2025Updated last year
- ☆56Mar 9, 2022Updated 4 years ago