☆11Jun 14, 2023Updated 3 years ago
Alternatives and similar repositories for gemini_wflow
Users that are interested in gemini_wflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Whole genome workflows☆13Nov 9, 2024Updated last year
- Code to accompany publication on cell free chromatin immunoprecipitation (cfChIP)☆14Jun 29, 2025Updated last year
- ☆33Mar 5, 2024Updated 2 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆25Oct 21, 2026Updated last week
- A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies☆10Mar 30, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Nov 18, 2022Updated 3 years ago
- ☆14Jul 20, 2026Updated 3 months ago
- cfDNA cell type of origin estimation☆36Oct 19, 2023Updated 3 years ago
- commandline tool for fast computation and correction of GC biases in WGS DNA datasets from liquid biopsy samples taking the fragment leng…☆10Nov 20, 2025Updated 11 months ago
- Light weight R package to do fast data splitting for cross-validation or train/valid/test splits☆13Apr 6, 2025Updated last year
- Calls somatic SNVs, indels, and allelic copy number jointly across multiple samples from the same patient. These can be standard tumor/n…☆10Oct 29, 2020Updated 6 years ago
- Tool for computation of the minimal coverage depth for given variant allele frequency and probability of sequencing error.☆12Aug 24, 2020Updated 6 years ago
- Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA☆80Jul 22, 2020Updated 6 years ago
- ☆80Jun 4, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package for CRAG☆12Feb 17, 2025Updated last year
- ☆58Jan 4, 2023Updated 3 years ago
- This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homep…☆22May 9, 2019Updated 7 years ago
- A set of scripts and functions for analyzing MeDIP-seq datasets☆16Feb 3, 2026Updated 8 months ago
- ♥ Essential Functions for DNA Manipulation☆20Jun 15, 2025Updated last year
- Detect somatic variants from tumor and normal WGS/WXS data☆21Sep 21, 2026Updated last month
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 6 years ago
- Multi-nucleotide variants (MNVs) in gnomAD 2.1☆14Sep 1, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- R Package for phasing of single cell Strand-seq data☆11Jan 14, 2025Updated last year
- A fork of Mini vMac 36.04 (https://www.gryphel.com/c/minivmac/index.html) that focuses on SDL 2 and Emscripten.☆15Nov 6, 2018Updated 7 years ago
- A flexible framework for nucleosome profiling of cell-free DNA☆32Jul 27, 2023Updated 3 years ago
- This is the software for FAst Marginal Epistasis test (FAME)☆14Jul 21, 2026Updated 3 months ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆18Nov 26, 2019Updated 6 years ago
- Workflow for Sequenza, cellularity and ploidy☆28Jun 11, 2026Updated 4 months ago
- ☆25Jan 18, 2022Updated 4 years ago
- Code referenced in the manuscript 'The 16S rRNA gene for species and strain-level microbiome analysis'☆12Sep 26, 2019Updated 7 years ago
- ☆13Nov 21, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Microsatellite instability (MSI) detection for cfDNA samples.☆21Feb 20, 2021Updated 5 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆199Apr 19, 2026Updated 6 months ago
- HgvsGo is a program designed for analyzing "c." and "p." HGVS (Human Genome Variation Society) notations for single nucleotide variations…☆17Nov 20, 2024Updated last year
- extract SV signal from a BAM☆10Jul 26, 2018Updated 8 years ago
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 10 years ago
- ☆13Sep 11, 2025Updated last year
- Run multiple Pipeline5 instances at once☆11Jun 6, 2025Updated last year