cancer-genomics / gemini_wflowLinks
☆11Updated 2 years ago
Alternatives and similar repositories for gemini_wflow
Users that are interested in gemini_wflow are comparing it to the libraries listed below
Sorting:
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Updated 3 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 5 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Updated last year
- ☆18Updated 4 years ago
- ☆17Updated last year
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Updated 5 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 6 years ago
- Workflow for Sequenza, cellularity and ploidy☆25Updated 4 months ago
- ☆26Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated this week
- ☆11Updated 2 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated last month
- DriverPower☆26Updated 11 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 10 months ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- Comprehensive analysis of small RNA sequencing data☆34Updated 7 months ago
- R package for CRAG☆12Updated 10 months ago
- Somatic point mutation caller☆17Updated 9 years ago
- CNV analysis workflow code for the manuscript☆13Updated 5 years ago
- ☆39Updated 4 years ago
- R package for DNA methylation analysis☆19Updated last year
- Filter and prioritize fusion calls☆20Updated last year
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 4 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆18Updated 3 months ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆24Updated 3 months ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- Long read to rMATS☆32Updated 2 years ago