zjniu / PiscisLinks
An automatic deep learning algorithm for spot detection in fluorescence microscopy images.
☆21Updated 2 weeks ago
Alternatives and similar repositories for Piscis
Users that are interested in Piscis are comparing it to the libraries listed below
Sorting:
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 7 months ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆49Updated 5 months ago
- Interactive visualization of spatial omics data☆61Updated last week
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆12Updated 2 months ago
- Image registration (alignment) software for large microscopy images☆25Updated last year
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 3 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated 2 years ago
- A plugin to visualise 3D spatial single cell omics☆22Updated 3 weeks ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 5 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆47Updated this week
- Deconvolution of widefield microscopy images and generation of point spread functions☆48Updated 3 weeks ago
- Toolbox for the analysis of smFISH images.☆68Updated last year
- Framework for image and flow cytometry analysis☆27Updated 2 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 9 months ago
- Integrated pipeline for multiplexed image analysis☆91Updated 3 months ago
- ☆63Updated 2 weeks ago
- Multiple-choice microscopy pipeline☆133Updated 4 months ago
- ☆17Updated last month
- ☆27Updated 9 months ago
- ☆33Updated last year
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 3 years ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- Whole slide image registration through wsireg in napari.☆13Updated 2 years ago
- Development of PICASSO plugin for napari☆17Updated 2 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆58Updated last month
- The official QuPath extension for InstanSeg☆21Updated last week
- ☆29Updated last year
- Minimum Information about Tissue Imaging☆20Updated last year
- Python API and Jupyter widget for Vitessce☆49Updated this week
- Tools and scripts for EASI-FISH image data analysis☆17Updated 2 years ago