An automatic deep learning algorithm for spot detection in fluorescence microscopy images.
☆29Apr 6, 2026Updated 4 months ago
Alternatives and similar repositories for Piscis
Users that are interested in Piscis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- UPenn ?☆20Updated this week
- Automated batch processing of cell and tissue microscopy image data in Napari☆22Aug 4, 2026Updated 2 weeks ago
- Accurate and efficient spot detection for microscopy data☆139Jun 8, 2026Updated 2 months ago
- Command-line client for Fractal☆49Updated this week
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- A napari plugin for zarr backed OME-NGFF images☆54Updated this week
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆81Aug 3, 2026Updated 2 weeks ago
- ☆16Updated this week
- Automated Segmentation of cellular substructures in Electron Microscopy☆18Jan 28, 2026Updated 6 months ago
- A Python package for single-cell spatial image analysis.☆18Aug 24, 2023Updated 2 years ago
- Loading and handling microscopy data in blender☆159Jul 15, 2026Updated last month
- Python API and Jupyter widget for Vitessce☆67Aug 10, 2026Updated last week
- Material for the DataLucence:Images course☆10Jun 14, 2017Updated 9 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆36May 19, 2025Updated last year
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆14Updated this week
- UNRAVEL: UN-biased high-Resolution Analysis and Validation of Ensembles using Light sheet images☆14Updated this week
- Block-wise operations for large nD volumes☆45Updated this week
- Image Mass Cytometry analysis pipeline☆26Jun 3, 2025Updated last year
- Raw format to OME-TIFF converter☆57Jul 27, 2026Updated 3 weeks ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆71Updated this week
- An introduction to OME-Zarr for big bioimaging data☆27Aug 10, 2026Updated last week
- Speed up coding/extending image analysis in Python.☆37May 9, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Supporting python library for "Deep Learning for Biology".☆32Mar 19, 2026Updated 4 months ago
- A Python package for unsupervised analysis of spatial (prote)omics data.☆19Jul 23, 2026Updated 3 weeks ago
- Source materials for a textbook on AI in Microscopy☆16Updated this week
- Google Colab notebook for Cellpose☆11Aug 21, 2025Updated 11 months ago
- Computational workflows to assess phototoxicity in live-cell microscopy experiments☆11Aug 11, 2026Updated last week
- A collection of resources on bioimage analysis and related tools and techniques☆14Apr 28, 2023Updated 3 years ago
- A minimal package for saving and reading large HDF5-based chunked arrays.☆15Apr 12, 2022Updated 4 years ago
- An OMERO.web app allowing to view images☆20Updated this week
- Segmentation error aware clustering for multiplexed imaging☆19Jan 9, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆25Apr 8, 2025Updated last year
- ☆21Apr 1, 2024Updated 2 years ago
- ☆23Updated this week
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆21Updated this week
- R package for visualization of highly multiplexed imaging data☆36Jun 9, 2026Updated 2 months ago
- Browse, share, and publish OME-Zarr data☆29Updated this week
- A minimal Zarr image viewer based on Viv.☆199Jun 22, 2026Updated last month