An automatic deep learning algorithm for spot detection in fluorescence microscopy images.
☆29Aug 21, 2026Updated 2 months ago
Alternatives and similar repositories for Piscis
Users that are interested in Piscis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- UPenn ?☆22Updated this week
- Automated batch processing of cell and tissue microscopy image data in Napari☆24Oct 21, 2026Updated 2 weeks ago
- Speed up coding/extending image analysis in Python.☆37Oct 12, 2026Updated 3 weeks ago
- Accurate and efficient spot detection for microscopy data☆148Jun 8, 2026Updated 5 months ago
- Command-line client for Fractal☆49Nov 2, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Dataframe-agnostic Zarr Storage powered by Narwhals☆10Dec 1, 2025Updated 11 months ago
- Solve bio-image analysis puzzles!☆13Apr 26, 2025Updated last year
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 3 years ago
- NL‑BIOMERO delivers a full containerized stack to run OMERO together with the BIOMERO 2.0 framework. It provides Docker/Podman configurat…☆13Updated this week
- A multi-dimensional spatial image data structure for scientific Python.☆45Aug 8, 2025Updated last year
- Unsupervised segmentation of cells and nuclei their in complex tissue samples☆12Apr 26, 2025Updated last year
- A napari plugin for zarr backed OME-NGFF images☆56Nov 2, 2026Updated last week
- A relabeling tool for tiled segmentation with Dask☆18Sep 24, 2024Updated 2 years ago
- ☆15Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Compile and explore arbitrarily large n-dimensional scientific data in the browser — points, lines, Gaussian splats and meshes, streamed …☆82Updated this week
- DualU-Net is a multi-task deep learning model for nuclei segmentation and classification. It employs a dual-decoder design that predicts …☆11Jun 2, 2025Updated last year
- Automated Segmentation of cellular substructures in Electron Microscopy☆18Jan 28, 2026Updated 9 months ago
- Material for the DataLucence:Images course☆10Jun 14, 2017Updated 9 years ago
- Loading and handling microscopy data in blender☆164Oct 2, 2026Updated last month
- Hierarchical visualization for R/Shiny☆10Apr 19, 2019Updated 7 years ago
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆81Nov 2, 2026Updated last week
- Accelerated Pixel and Object Classifiers (APOC)☆61Aug 11, 2026Updated 2 months ago
- Large image tiling and stitching library for scaling Python functions to arbitrary input image sizes.☆13Nov 17, 2025Updated 11 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- S3 Proxy Service☆13Oct 25, 2026Updated 2 weeks ago
- A Python package for single-cell spatial image analysis.☆18Aug 24, 2023Updated 3 years ago
- A minimal Zarr image viewer based on Viv.☆201Jun 22, 2026Updated 4 months ago
- Block-wise operations for large nD volumes☆45Updated this week
- ☆36May 19, 2025Updated last year
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Jan 6, 2023Updated 3 years ago
- Python API and Jupyter widget for Vitessce☆67Updated this week
- Image Mass Cytometry analysis pipeline☆26Jun 3, 2025Updated last year
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆11Dec 13, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Feature extraction for labeled objects in images using regionprops from scikit-image☆58May 1, 2025Updated last year
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆75Updated this week
- Raw format to OME-TIFF converter☆59Oct 1, 2026Updated last month
- Python package for COZI neighbor preference analysis☆11May 12, 2026Updated 5 months ago
- Low level analysis for MIBI images☆11Apr 4, 2019Updated 7 years ago
- A web-based resource for the scientific visualization community to enhance reproducibility and facilitate testing and development of OME-…☆34Nov 3, 2026Updated last week
- An introduction to OME-Zarr for big bioimaging data☆30Updated this week
Are these results useful?