zjniu / Piscis
An automatic deep learning algorithm for spot detection in fluorescence microscopy images.
☆20Updated 3 months ago
Alternatives and similar repositories for Piscis:
Users that are interested in Piscis are comparing it to the libraries listed below
- EASI-FISH analysis pipeline for spatial transcriptomics☆34Updated 5 months ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 3 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- Interactive visualization of spatial omics data☆53Updated this week
- Tool for precise, interactive, fast and scalable FISH spot detection☆49Updated 2 months ago
- Toolbox for the analysis of smFISH images.☆59Updated last year
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 2 months ago
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 3 years ago
- A plugin to visualise 3D spatial single cell omics☆22Updated last year
- The 2023 version of cellPLATO☆14Updated 5 months ago
- Development of PICASSO plugin for napari☆16Updated 2 years ago
- ☆28Updated 6 months ago
- Image registration (alignment) software for large microscopy images☆25Updated last year
- Whole slide image registration through wsireg in napari.☆13Updated 2 years ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 4 years ago
- Deconvolution of widefield microscopy images and generation of point spread functions☆46Updated 3 weeks ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆44Updated 2 weeks ago
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆12Updated last week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆42Updated last week
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 7 months ago
- ☆30Updated 11 months ago
- ☆59Updated this week
- ☆17Updated last month
- A scalable machine learning pipeline for probe specificity prediction.☆14Updated last year
- ☆32Updated last year
- Deep learning based spot detection for FISH images.☆21Updated 8 months ago
- A relabeling tool for tiled segmentation with Dask☆16Updated 6 months ago
- Tools and scripts for EASI-FISH image data analysis☆17Updated 2 years ago
- Framework for image and flow cytometry analysis☆25Updated last week
- MethodsJ2☆14Updated 2 years ago