FlowRegSuite / flow_registrationLinks
Flow-Registration toolbox for 2P motion compensation
☆27Updated 4 months ago
Alternatives and similar repositories for flow_registration
Users that are interested in flow_registration are comparing it to the libraries listed below
Sorting:
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated 2 months ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Updated 2 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆55Updated last year
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated 2 years ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆34Updated last month
- Calcium Data Extraction and Analysis☆49Updated 3 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆113Updated 5 months ago
- ☆34Updated 8 months ago
- motion correction☆17Updated 3 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆34Updated 5 years ago
- Automated 3D brain registration with support for multiple species and atlases.☆143Updated this week
- Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)☆15Updated 2 years ago
- ☆17Updated 2 years ago
- ☆46Updated 5 years ago
- Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.☆98Updated 5 months ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Updated 2 years ago
- BIRDS plug-in on Fiji and attached jar package☆21Updated 4 years ago
- ☆18Updated 3 years ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated last week
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆24Updated 3 years ago
- The framework for quantification of neuronal anatomy☆55Updated this week
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆83Updated last year
- ☆41Updated 4 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆138Updated last month
- Repo for CCN workshop on caiman and mesmerize in January 2023☆13Updated 2 years ago
- Tools for working with single-neuron morphological reconstructions☆22Updated last year