kohth / cildsLinks
Dimensionality reduction of calcium-imaged neuronal population activity
☆15Updated 2 years ago
Alternatives and similar repositories for cilds
Users that are interested in cilds are comparing it to the libraries listed below
Sorting:
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆90Updated 8 months ago
- ☆39Updated 3 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆31Updated 5 years ago
- Region Of Interest Classification and Tracking☆19Updated this week
- miniscope analysis pipeline with interactive visualizations☆94Updated 11 months ago
- Pytorch implementation of LocaNMF☆36Updated 5 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆147Updated last month
- Platform for Calcium Imaging analysis. DEPRECATED.☆61Updated last year
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆147Updated 11 months ago
- Deconvolution of calcium imaging data☆96Updated 5 months ago
- Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)☆15Updated 2 years ago
- ☆23Updated 5 years ago
- Calcium Data Extraction and Analysis☆45Updated 2 years ago
- Supervised and unsupervised techniques to decode signals from a population of neurons: the case of head-direction cells.☆12Updated 5 years ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Histology processing☆66Updated last month
- Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)☆46Updated 5 years ago
- Revealing neural correlates of behavior without behavioral measurements☆14Updated 5 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆50Updated last year
- ☆28Updated last year
- IBL core shared libraries☆63Updated 2 weeks ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆75Updated 7 months ago
- A MATLAB toolbox for running behavioral neuroscience experiments and managing data☆33Updated last year
- Tools to register histological section images and cell count locations to mouse brain atlas☆27Updated 3 years ago
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆61Updated this week
- ☆52Updated 10 months ago
- IaC codebase for the NeuroCAAS Platform☆38Updated last year
- a visualization method for neural data☆229Updated 3 months ago
- Algorithm for automated source extraction from 1P data☆20Updated 2 years ago