Alternatives and similar repositories for GC_content_in_sliding_window:

Users that are interested in GC_content_in_sliding_window are comparing it to the libraries listed below

• FAANG / analysis-TAGADA
  GENE-SWitCH project RNA-Seq analysis pipeline
  ☆26Updated last month
• phasegenomics / hic_qc
  A (very) simple script to QC Hi-C data.
  ☆25Updated 3 months ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆64Updated last month
• HajkD / LTRpred
  De novo annotation of young retrotransposons
  ☆48Updated 2 years ago
• Shians / NanoMethViz
  ☆26Updated 2 weeks ago
• johnssproul / RepeatProfiler
  ☆24Updated last month
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆59Updated last year
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• enormandeau / gawn
  Genome Annotation Without Nightmares
  ☆43Updated 2 months ago
• DrosophilaGenomeEvolution / TrEMOLO
  Transposable Elements MOvement detection using LOng reads
  ☆21Updated 4 months ago
• dwinter / repeatR
  read and analyse RepeatMasker output
  ☆24Updated last year
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆54Updated last year
• tao-bioinfo / readfq
  A simple tool to calculate reads number and total base count in FASTQ file
  ☆20Updated 6 years ago
• thackl / seq-scripts
  scripts for sequence and feature conversion, annotation, analysis ...
  ☆27Updated last week
• tseemann / samclip
  Filter SAM file for soft and hard clipped alignments
  ☆46Updated 9 months ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆36Updated 2 years ago
• B-UMMI / long-read-catalog
  catalog for long-read sequencing tools
  ☆32Updated 2 years ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆71Updated 3 years ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆66Updated 7 years ago
• bergmanlab / drosophila-transposons
  Drosophila transposable element canonical sequences
  ☆28Updated 2 years ago
• 4ureliek / TEanalysis
  Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.
  ☆26Updated 5 years ago
• Trinotate / Trinotate.github.io
  web documentation for Trinotate
  ☆48Updated 2 years ago
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆43Updated 11 months ago
• drostlab / myTAI
  Evolutionary Transcriptomics with R
  ☆42Updated 2 weeks ago
• yongzhiyang2012 / WGDdetector
  ☆21Updated 5 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• timplab / nanopore-methylation-utilities
  ☆29Updated 4 years ago
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆65Updated 3 years ago
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆33Updated last year
• BGI-shenzhen / BamDeal
  BamDeal: a comprehensive toolkit for bam manipulation
  ☆53Updated 2 years ago