DamienFr / GC_content_in_sliding_windowLinks
Calculate GC% and GC deviation for circular genomes
☆17Updated last month
Alternatives and similar repositories for GC_content_in_sliding_window
Users that are interested in GC_content_in_sliding_window are comparing it to the libraries listed below
Sorting:
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- A (very) simple script to QC Hi-C data.☆26Updated 11 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Synteny Imager☆65Updated last month
- Calculate circos format data of GC content and GC skew from genome data.☆12Updated 2 months ago
- ☆26Updated 9 months ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last year
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- ☆45Updated 8 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆33Updated last year
- Rank-based Gene Ontology analysis of gene expression data☆43Updated 3 years ago
- Transposable Elements MOvement detection using LOng reads☆25Updated 4 months ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Updated 8 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆115Updated 2 weeks ago
- Simple pileup-based variant caller☆94Updated 7 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- ☆29Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 2 weeks ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆29Updated 9 months ago
- ☆30Updated 4 years ago
- ☆35Updated 2 years ago
- Automated de novo assembly of whole chloroplast genomes.☆47Updated last year
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 10 months ago
- ☆31Updated 2 months ago