DamienFr / GC_content_in_sliding_windowLinks
Calculate GC% and GC deviation for circular genomes
☆17Updated 5 years ago
Alternatives and similar repositories for GC_content_in_sliding_window
Users that are interested in GC_content_in_sliding_window are comparing it to the libraries listed below
Sorting:
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- A (very) simple script to QC Hi-C data.☆26Updated 8 months ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Simple pileup-based variant caller☆92Updated 4 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- ☆26Updated 6 months ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- ☆44Updated 8 years ago
- Synteny Imager☆64Updated last month
- Error correction of ONT transcript reads☆58Updated last year
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆31Updated last year
- Calculate circos format data of GC content and GC skew from genome data.☆11Updated 10 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Filter SAM file for soft and hard clipped alignments☆53Updated last year
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆108Updated last month
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 7 months ago
- Transposable Elements MOvement detection using LOng reads☆22Updated last month
- A pipeline that accepts a VCF file to run through Admixture☆62Updated 7 months ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Updated 7 years ago
- HyPhy standalone analyses☆46Updated last week
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆25Updated 4 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆32Updated 4 months ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- ☆30Updated 2 weeks ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 7 months ago
- ☆52Updated 2 months ago
- read and analyse RepeatMasker output☆24Updated 2 years ago
- python plotly Circos from VCF☆38Updated last year