UPHL-BioNGS / Cecret
Reference-based consensus creation
☆53Updated last week
Alternatives and similar repositories for Cecret
Users that are interested in Cecret are comparing it to the libraries listed below
Sorting:
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- Split Kmer Analysis☆64Updated 2 years ago
- Precise host read removal☆94Updated 3 weeks ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆97Updated last month
- Standard database for the TBProfiler tool☆29Updated 2 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆78Updated 8 months ago
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆48Updated 2 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 10 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Bioinformatics Pipeline and Visualization resources☆55Updated 8 months ago
- Microbiome classification pipeline☆66Updated this week
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated 2 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 5 years ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆102Updated 3 weeks ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 2 months ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆73Updated last year
- Reorients assembled microbial sequences☆117Updated last month
- SC2 variant detection and composition pipeline☆17Updated last year
- Code Safety Inspection Service☆20Updated 2 years ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 4 years ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆126Updated this week
- DDBJ Fast Annotation and Submission Tool☆80Updated 2 weeks ago
- PHANOTATE: a gene caller for phages.☆75Updated 5 months ago
- IS mapping software☆54Updated 3 years ago
- ☆82Updated last year
- Estimate metagenomic coverage and sequence diversity☆51Updated 9 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆47Updated this week