UPHL-BioNGS / CecretLinks
Reference-based consensus creation
☆57Updated last week
Alternatives and similar repositories for Cecret
Users that are interested in Cecret are comparing it to the libraries listed below
Sorting:
- Precise host read removal☆110Updated 3 months ago
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆100Updated last week
- Standard database for the TBProfiler tool☆31Updated 4 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆47Updated 2 months ago
- Split Kmer Analysis☆66Updated 3 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆86Updated last year
- A tool for removing redundant genomes from a set of assemblies☆77Updated 3 months ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆60Updated last week
- Bioinformatics Pipeline and Visualization resources☆60Updated last year
- Microbiome classification pipeline☆65Updated 7 months ago
- ☆84Updated 2 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆90Updated 3 weeks ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆40Updated last week
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆50Updated 3 years ago
- IS mapping software☆57Updated 4 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆76Updated 2 years ago
- Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.☆74Updated last week
- A toolkit for prokaryotic comparative genomics☆51Updated 2 months ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆42Updated 4 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- Estimate metagenomic coverage and sequence diversity☆58Updated last week
- SeqSero2☆39Updated 2 months ago
- Recombination-free trees☆64Updated 3 months ago
- Code Safety Inspection Service☆20Updated 3 years ago
- Split k-mer analysis – version 2☆101Updated last week
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆46Updated 3 months ago