UPHL-BioNGS / CecretLinks
Reference-based consensus creation
β57Updated this week
Alternatives and similar repositories for Cecret
Users that are interested in Cecret are comparing it to the libraries listed below
Sorting:
- PopPUNK π¨βπ€ (POPulation Partitioning Using Nucleotide Kmers)β102Updated last week
- a collection of scripts for organising bacterial genomes by speciesβ81Updated 3 years ago
- Precise host read removalβ114Updated 4 months ago
- Standard database for the TBProfiler toolβ31Updated 5 months ago
- Split Kmer Analysisβ67Updated 3 years ago
- A tool for removing redundant genomes from a set of assembliesβ78Updated 4 months ago
- Microbiome classification pipelineβ65Updated 8 months ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignmentsβ80Updated 2 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)β45Updated 5 years ago
- IS mapping softwareβ57Updated 4 years ago
- GTDB taxonomy taxdump files with trackable TaxIdsβ57Updated 8 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomesβ54Updated 2 years ago
- Identify phage regions in bacterial genomes for masking purposesβ33Updated 6 years ago
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomiβ¦β67Updated 10 months ago
- post processing of bacterial pangenome gene presence/absence matricesβ63Updated this week
- Bioinformatics Pipeline and Visualization resourcesβ60Updated last year
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological dataβ47Updated 2 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasetsβ75Updated last year
- Estimate metagenomic coverage and sequence diversityβ58Updated last month
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes databaseβ43Updated 5 years ago
- Prediction of prophages from bacterial genomesβ81Updated 7 months ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifiβ¦β42Updated 4 years ago
- Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.β74Updated this week
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomiβ¦β61Updated this week
- scripts for estimating bacteria replication rates based on population genome copy number variationβ73Updated 6 years ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomiβ¦β41Updated last week
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencingβ68Updated 4 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomesβ54Updated 2 months ago
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.β48Updated this week
- Recombination-free treesβ63Updated 4 months ago