MrTomRod / scoary-2View external linksLinks
Calculate assocations between genes and traits
☆29Mar 10, 2025Updated 11 months ago
Alternatives and similar repositories for scoary-2
Users that are interested in scoary-2 are comparing it to the libraries listed below
Sorting:
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Jan 31, 2026Updated last week
- PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes☆25Dec 4, 2023Updated 2 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆99Jul 8, 2022Updated 3 years ago
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Sep 18, 2024Updated last year
- BEAV: Bacterial Element Annotation reVamped☆73Aug 21, 2025Updated 5 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Jan 19, 2026Updated 3 weeks ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 4 months ago
- ☆25Jan 30, 2025Updated last year
- Pan-genome wide association studies☆207May 29, 2024Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆290Feb 3, 2026Updated last week
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 6 years ago
- Fast sequence distance estimates☆26Jan 29, 2026Updated 2 weeks ago
- Remove human reads from a sequencing run☆47Dec 16, 2025Updated last month
- Plasmid analysis using rearrangement distances☆50Jan 23, 2026Updated 3 weeks ago
- Precise host read removal☆115Sep 4, 2025Updated 5 months ago
- SEER, reimplemented in python 🐍🔮☆130May 22, 2025Updated 8 months ago
- Reorients assembled microbial sequences☆132Aug 21, 2025Updated 5 months ago
- Autometa: Automated Extraction of Genomes from Shotgun Metagenomes☆45Jan 24, 2025Updated last year
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆121Feb 5, 2026Updated last week
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆209Updated this week
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆81Dec 4, 2025Updated 2 months ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Dec 12, 2024Updated last year
- ☆82Nov 27, 2025Updated 2 months ago
- zDB: comparative bacterial genomics made easy☆38Feb 2, 2026Updated last week
- A bioinformatic toolkit to align genome assemblies into pangenome graphs☆121Jan 20, 2026Updated 3 weeks ago
- Bacterial phylogenetics in BEAST 2.☆18Mar 30, 2023Updated 2 years ago
- Genome size estimation from long read overlaps☆80Dec 1, 2025Updated 2 months ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆38Sep 22, 2022Updated 3 years ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆350Jan 31, 2026Updated last week
- Graph-based assembly phasing☆91Nov 25, 2025Updated 2 months ago
- ☆82Jan 16, 2026Updated 3 weeks ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆23Aug 1, 2025Updated 6 months ago
- ☆23Sep 9, 2025Updated 5 months ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated last year
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆211Aug 27, 2025Updated 5 months ago
- Recombination-free trees☆63Sep 1, 2025Updated 5 months ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated 11 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63May 18, 2020Updated 5 years ago