MrTomRod / scoary-2Links
Calculate assocations between genes and traits
☆28Updated 7 months ago
Alternatives and similar repositories for scoary-2
Users that are interested in scoary-2 are comparing it to the libraries listed below
Sorting:
- Bacterial GWAS analysis☆45Updated 3 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆31Updated last month
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- Discover and annotate the virome☆53Updated 2 weeks ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 6 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆64Updated this week
- Gene Absence Presence Identification tool.☆27Updated 7 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 months ago
- MAGScoT - a MAG scoring and refinement tool☆37Updated last year
- A toolkit for prokaryotic comparative genomics☆51Updated 2 weeks ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆41Updated 2 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- zDB: comparative bacterial genomics made easy☆36Updated last week
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 4 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 8 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated last week
- Recombination-free trees☆60Updated last month
- Order and orientation of complete bacterial genomes☆29Updated 3 months ago
- Prophage Activity Estimator☆28Updated last year
- ☆24Updated 9 months ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆48Updated last month
- Automatic eukaryotic taxonomic classification☆28Updated 5 months ago