MrTomRod / scoary-2
Calculate assocations between genes and traits
☆23Updated last month
Alternatives and similar repositories for scoary-2:
Users that are interested in scoary-2 are comparing it to the libraries listed below
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated last month
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 8 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- MAGScoT - a MAG scoring and refinement tool☆34Updated 6 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 5 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆33Updated last month
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Prophage Activity Estimator☆26Updated 10 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆18Updated last year
- Bacterial GWAS analysis☆39Updated this week
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated 9 months ago
- Order and orientation of complete bacterial genomes☆27Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆39Updated 5 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆33Updated 3 years ago
- ☆25Updated last year
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated last year
- ☆20Updated 7 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated last month
- Gene Absence Presence Identification tool.☆26Updated 2 weeks ago
- ☆13Updated 7 years ago
- ☆13Updated last year
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated 11 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆33Updated 2 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated this week
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- ☆16Updated 3 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆20Updated 6 months ago
- IslandPath standalone software☆31Updated last year