Alternatives and similar repositories for uorf4u

Users that are interested in uorf4u are comparing it to the libraries listed below

• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆31Updated 3 years ago
• zhutao1009 / dnds
  Calculate the dn/ds (also pn and ps) value of cds
  ☆13Updated 4 years ago
• matsengrp / phip-flow
  A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets
  ☆12Updated 3 months ago
• Arcadia-Science / 2023-nr-clustering
  Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
  ☆23Updated last year
• songlab-cal / CherryML
  Scalable Maximum Likelihood Estimation of Phylogenetic Models
  ☆14Updated 2 months ago
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆32Updated 11 months ago
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆34Updated 2 months ago
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆24Updated last week
• carnegie / PlantClusterFinder
  ☆17Updated 11 months ago
• jhhung / EARRINGS
  EARRINGS: An efficient and ingenious adapter removal design for large-scale NGS meta-analyses
  ☆9Updated last week
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated 2 years ago
• comprna / R2Dtool
  Analyse RNA feature distributions.
  ☆16Updated 5 months ago
• nterhoeven / blast2bed
  convert a blast output to a bed file
  ☆12Updated 9 years ago
• sanger-pathogens / nano-rave
  Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…
  ☆11Updated 9 months ago
• davidemms / STRIDE
  STRIDE: Species Tree Root Inference from Gene Duplication Events
  ☆11Updated 6 years ago
• redsnic / WGA-LP
  A pipeline for whole genome assembly
  ☆16Updated 3 years ago
• DessimozLab / edgehog
  Infering ancestral synteny with hierarchical orthologous groups
  ☆14Updated 3 weeks ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆39Updated this week
• torkian / blast-QC
  A Quality Control filter and parser for NCBI BLAST XML results.
  ☆16Updated 4 years ago
• moshi4 / pybarrnap
  Python implementation of barrnap (Bacterial ribosomal RNA predictor)
  ☆18Updated 3 months ago
• PNNL-CompBio / Snekmer
  Pipeline to apply encoded Kmer analysis to protein sequences
  ☆16Updated last month
• xia-lab / Seq2Fun
  ☆16Updated last year
• Maize-Genetics-and-Genomics-Database / FASSO
  FASSO: Functional Annotations using Sequence and Structure Orthology
  ☆9Updated 2 years ago
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆27Updated last month
• saezlab / flop
  FunctionaL Omics Processing platform
  ☆13Updated 9 months ago
• althonos / pyfastani
  Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
  ☆22Updated last month
• phac-nml / gview-wiki
  The gview wiki migrated to GitHub.
  ☆11Updated 4 years ago
• almeidasilvaf / syntenet
  An R package to infer and analyze synteny networks from protein sequences
  ☆30Updated 4 months ago
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆20Updated 6 months ago
• peng-ye / MetaPGN
  A pipeline for construction and graphical visualization of annotated pangenome networks.
  ☆17Updated 6 years ago