GCA-VH-lab / uorf4uLinks
uorf4u is a bioinformatics tool for conserved upstream ORF annotation.
☆13Updated last month
Alternatives and similar repositories for uorf4u
Users that are interested in uorf4u are comparing it to the libraries listed below
Sorting:
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Updated 2 years ago
- ☆17Updated last year
- Generation and updating of protein families☆21Updated last week
- Scalable Maximum Likelihood Estimation of Phylogenetic Models☆17Updated 7 months ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Updated 2 months ago
- rnalib: a python-based transcriptomics library☆11Updated 5 months ago
- ☆13Updated last year
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Updated 2 years ago
- A pipeline for construction and graphical visualization of annotated pangenome networks.☆17Updated 7 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated last month
- MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences☆14Updated 3 years ago
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆20Updated 8 months ago
- Evolcust retrieves groups of genes that appear clustered together in groups of species☆16Updated 3 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- Python bindings for the TaxonKit library☆40Updated 4 months ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆23Updated last year
- ☆17Updated 3 months ago
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆14Updated 2 months ago
- Automated pipeline for whole bacterial genome analysis based on snakemake☆12Updated 3 years ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆35Updated last year
- Graph Clustering Merger☆36Updated last year
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆23Updated 2 weeks ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆29Updated 6 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- Python implementation of barrnap (Bacterial ribosomal RNA predictor)☆22Updated 9 months ago
- Calculate the dn/ds (also pn and ps) value of cds☆13Updated 5 years ago
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆11Updated 7 months ago
- A Quality Control filter and parser for NCBI BLAST XML results.☆17Updated 5 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25Updated 2 years ago