GCA-VH-lab / uorf4uLinks
uorf4u is a bioinformatics tool for conserved upstream ORF annotation.
☆13Updated 3 weeks ago
Alternatives and similar repositories for uorf4u
Users that are interested in uorf4u are comparing it to the libraries listed below
Sorting:
- ☆17Updated last year
- Analyse RNA feature distributions.☆16Updated 6 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆35Updated 3 months ago
- Associated code for EvoWeaver publication☆15Updated last month
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago
- Calculate the dn/ds (also pn and ps) value of cds☆13Updated 4 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Scalable Maximum Likelihood Estimation of Phylogenetic Models☆15Updated 3 months ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆13Updated 4 months ago
- A Quality Control filter and parser for NCBI BLAST XML results.☆17Updated 4 years ago
- ☆16Updated last year
- A pipeline for construction and graphical visualization of annotated pangenome networks.☆17Updated 6 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 2 months ago
- Evolcust retrieves groups of genes that appear clustered together in groups of species☆16Updated 2 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- k-mer similarity analysis pipeline☆21Updated 3 weeks ago
- FunctionaL Omics Processing platform☆13Updated 11 months ago
- EARRINGS: An efficient and ingenious adapter removal design for large-scale NGS meta-analyses☆9Updated last month
- Better Alignments with Translated HMMER☆21Updated last week
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆25Updated last month
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated 2 months ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Updated 2 years ago
- convert a blast output to a bed file☆12Updated 10 years ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Updated last week
- Python bindings for the TaxonKit library☆41Updated last month
- MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks☆10Updated 7 years ago
- 16S pipeline using qiime2 created with snakemake☆11Updated 2 months ago
- Read, parse and operate different multiple input file formats with OpenVariant☆12Updated last month
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆18Updated 4 months ago
- A tool for scanning FASTA protein sequences against a library of Pfam HMMs☆14Updated 2 years ago