GCA-VH-lab / uorf4uLinks
uorf4u is a bioinformatics tool for conserved upstream ORF annotation.
☆13Updated 2 months ago
Alternatives and similar repositories for uorf4u
Users that are interested in uorf4u are comparing it to the libraries listed below
Sorting:
- Scalable Maximum Likelihood Estimation of Phylogenetic Models☆18Updated 8 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 2 months ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Updated 3 months ago
- Generation and updating of protein families☆21Updated this week
- MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences☆14Updated 3 years ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 weeks ago
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆11Updated 8 months ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Updated 2 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- ☆17Updated last year
- Python bindings for the TaxonKit library☆41Updated 4 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆29Updated 7 months ago
- A pipeline for construction and graphical visualization of annotated pangenome networks.☆17Updated 7 years ago
- ☆13Updated last year
- ☆17Updated 2 weeks ago
- FASSO: Functional Annotations using Sequence and Structure Orthology☆10Updated 2 years ago
- Calculate the dn/ds (also pn and ps) value of cds☆13Updated 5 years ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆35Updated last year
- rnalib: a python-based transcriptomics library☆11Updated last week
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆78Updated last week
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- ☆11Updated 8 months ago
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Updated 2 months ago
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆60Updated last year
- ☆17Updated 8 months ago
- ☆36Updated 4 months ago
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆23Updated last year
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆33Updated last year
- ☆19Updated 3 years ago
- Python implementation of barrnap (Bacterial ribosomal RNA predictor)☆22Updated 9 months ago