Toolkit to convert the output of common variant calling programs to VCF
☆23Dec 7, 2022Updated 3 years ago
Alternatives and similar repositories for all2vcf
Users that are interested in all2vcf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- base-level dotplots from PAF alignments☆35Sep 18, 2025Updated 9 months ago
- General purpose tools for every-day sequencing bioinformatics. If you use any of these tools, please acknowledge this repository (there a…☆12Oct 13, 2020Updated 5 years ago
- Syllabus and materials for bioinformatics lecture + lab☆21Apr 23, 2015Updated 11 years ago
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆21Feb 12, 2026Updated 4 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆10Jun 13, 2020Updated 6 years ago
- ☆23Apr 2, 2026Updated 3 months ago
- Package to Draw NLR Domain Architecture using NLRtracker Output☆16Jul 30, 2021Updated 4 years ago
- ☆10Jun 13, 2026Updated 3 weeks ago
- a tool for inferring species tree from sequencing reads☆161May 19, 2026Updated last month
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆47Aug 20, 2025Updated 10 months ago
- Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences☆18Updated this week
- plot Multiple Sequence Alignment(MSA) of Clustal by python package☆14Mar 14, 2023Updated 3 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Pipeline for Nanopore sequencing: demultiplexing, variant calling, and quality visualization with error handling.☆12May 10, 2026Updated last month
- A simple and lightweight parallel task engine☆35Aug 12, 2024Updated last year
- Reorients assembled microbial sequences☆141Jun 30, 2026Updated last week
- Wally: Visualization of aligned sequencing reads and contigs☆126Updated this week
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Sep 27, 2019Updated 6 years ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆232Sep 6, 2025Updated 10 months ago
- Scanning and visualization for variable gap motifs.☆18Aug 6, 2024Updated last year
- ☆162Apr 13, 2026Updated 2 months ago
- Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)☆12Aug 6, 2023Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Detecting multi-genome synteny using minimizer graph mapping☆109Jun 12, 2026Updated 3 weeks ago
- snipit: summarise snps relative to your reference sequence☆178Jan 13, 2026Updated 5 months ago
- Assembly of Nanopore Sequencing☆17May 21, 2026Updated last month
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Dec 28, 2021Updated 4 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated 2 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Jun 15, 2026Updated 3 weeks ago
- Synteny and Rearrangement Identifier☆474Jul 1, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Handy scripts for routine bioinformatic analysis☆21May 5, 2025Updated last year
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 9 months ago
- Miscellaneous scripts for applications of PacBio systems☆27Apr 19, 2022Updated 4 years ago
- Upscaling SV detection to a multi-population level.☆22Jul 28, 2025Updated 11 months ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Jun 3, 2026Updated last month
- k-mers and the like☆23Updated this week
- Two methods for mapping and visualizing associated data on phylogeny using ggtree☆12Dec 25, 2018Updated 7 years ago