MatteoSchiavinato / all2vcfLinks
Toolkit to convert the output of common variant calling programs to VCF
☆23Updated 3 years ago
Alternatives and similar repositories for all2vcf
Users that are interested in all2vcf are comparing it to the libraries listed below
Sorting:
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Updated last month
- A Nextflow pipeline for evaluating assembly quality☆38Updated 2 months ago
- MCHelper: An automatic tool to curate transposable element libraries☆45Updated 6 months ago
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- ☆68Updated this week
- ☆35Updated 5 years ago
- A program for assessing the T2T genome continuity☆92Updated 3 weeks ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- finshingTool☆54Updated 9 years ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated last month
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- 🪡Correct and scaffold assemblies using long reads☆56Updated 4 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆96Updated this week
- perSVade: personalized Structural Variation detection☆40Updated 4 months ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 3 years ago
- A organelle de novo genome assembly toolkit☆72Updated 10 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆47Updated this week
- ☆29Updated 2 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- k-mer learning materials☆82Updated 10 months ago
- Multi-genome synteny block visualization tool☆52Updated 2 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆53Updated 10 months ago
- Call select base modifications in PacBio HiFi reads☆15Updated 2 months ago
- ☆33Updated last year
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆23Updated 5 years ago
- TGS scaffolding☆47Updated 4 years ago