MatteoSchiavinato / all2vcfLinks
Toolkit to convert the output of common variant calling programs to VCF
☆23Updated 2 years ago
Alternatives and similar repositories for all2vcf
Users that are interested in all2vcf are comparing it to the libraries listed below
Sorting:
- Annotation helper tool for the manual curation of transposable element consensus sequences☆49Updated 4 months ago
- A Nextflow pipeline for evaluating assembly quality☆35Updated this week
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆40Updated 3 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆79Updated 2 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- ☆42Updated last year
- A program for assessing the T2T genome continuity☆81Updated 2 weeks ago
- ☆30Updated 6 months ago
- ☆37Updated last year
- ☆42Updated 5 months ago
- ☆63Updated last week
- A tool for evaluate long-read de novo assembly results☆48Updated 10 months ago
- Show pangenome graphs in an easy way☆56Updated 2 years ago
- ☆32Updated 4 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 8 months ago
- A organelle de novo genome assembly toolkit☆60Updated 4 months ago
- ☆27Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 4 months ago
- TGS scaffolding☆46Updated 3 years ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- ☆36Updated 2 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 2 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last week
- ☆28Updated last year
- MCHelper: An automatic tool to curate transposable element libraries☆36Updated 2 weeks ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- Call select base modifications in PacBio HiFi reads☆8Updated 5 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆49Updated last year
- Multi-genome synteny block visualization tool☆42Updated 5 months ago