Harmonizing pathway databases using Biological Expression Language (BEL)
☆20Jul 1, 2024Updated last year
Alternatives and similar repositories for PathMe
Users that are interested in PathMe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Nov 3, 2021Updated 4 years ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Feb 11, 2022Updated 4 years ago
- PyBioPAX: A python implementation of the BioPAX object model☆27May 10, 2024Updated last year
- 📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology☆32Dec 16, 2019Updated 6 years ago
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Mar 2, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- JSON-LD Contexts for Bioinformatics Data☆24Mar 25, 2024Updated 2 years ago
- PyCTD is a Python software package to query and analyse data from the CTD database☆12Oct 6, 2022Updated 3 years ago
- Single sample pathway analysis tools for omics data☆13Nov 9, 2024Updated last year
- Repository for Apollo-SV ontology. Versioning Apollo-SV independently of the software was made easiest by having it as a separate reposi…☆11Updated this week
- The nPYc-Toolbox defines objects for representing, and implements functions to manipulate and display, metabolic profiling datasets.☆25Aug 8, 2025Updated 8 months ago
- ☆38Jan 14, 2026Updated 2 months ago
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆61Mar 30, 2026Updated last week
- Python library (C++ backend) for degree-preserving network randomization☆14Oct 14, 2019Updated 6 years ago
- The Ontology for Modeling and Representation of Social Entities☆21Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Schema for chemistry ontology classes☆23Updated this week
- INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and datab…☆206Mar 30, 2026Updated last week
- Ontology cross-reference and mapping service☆20Dec 12, 2025Updated 3 months ago
- Goslin is the Grammar on succinct lipid nomenclature.☆13Mar 26, 2026Updated 2 weeks ago
- JavaScript-based pathway viewer and editor☆35Feb 20, 2025Updated last year
- Performs BLAST on compressed proteomic data.☆17Jun 15, 2015Updated 10 years ago
- Vancouver Event and Relation System for Extraction☆11Nov 9, 2017Updated 8 years ago
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆28Apr 2, 2026Updated last week
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Mar 26, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- This code allows is for diversity picking across multiple different, and potentially overlapping chemical compound classes, while at the …☆12Oct 30, 2020Updated 5 years ago
- COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology☆43Jul 5, 2021Updated 4 years ago
- GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data☆12Feb 22, 2024Updated 2 years ago
- ☆25May 7, 2022Updated 3 years ago
- TFregulomeR reveals transcription factors’ context-specific features and functions☆15Apr 18, 2022Updated 3 years ago
- 👁️🗨️ Scientists often do the same bad stuff. Automate giving deterministic feedback during peer review with determinstic (LLM-free)☆30May 9, 2025Updated 11 months ago
- FELLA: an R package for Metabolomics data enrichment through diffusion☆24Jan 23, 2026Updated 2 months ago
- Functional Embedding of Gene Signatures☆48Feb 29, 2024Updated 2 years ago
- The official PySCeS project source code repository.☆40Mar 20, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆12May 17, 2022Updated 3 years ago
- ☆18Mar 5, 2023Updated 3 years ago
- A Python package for drug discovery by analyzing causal paths on multiscale networks☆28Jul 1, 2024Updated last year
- A tool to annotate human VCF files with PolyPhen2 effect measures☆10Dec 26, 2022Updated 3 years ago
- 📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures☆75Mar 15, 2026Updated 3 weeks ago
- A Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases.☆17Jul 9, 2024Updated last year
- GeneMiner2 is an enhanced version of our previous developments Easy353 and GeneMiner☆15Mar 19, 2026Updated 3 weeks ago