Alternatives and similar repositories for PathMe

Users that are interested in PathMe are comparing it to the libraries listed below

• bio2bel / bio2bel
  A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
  ☆21Updated 4 years ago
• pathwayforte / pathway-forte
  A Python package for benchmarking pathway database with functional enrichment and classification methods
  ☆13Updated 4 years ago
• AnacletoLAB / RNA-KG
  Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,…
  ☆27Updated 3 months ago
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆36Updated 3 years ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 3 years ago
• ISCB-Academy / Elements-of-Style-Reproducible-Workflow-Creation-Maintenance-Tutorial
  ☆19Updated 3 years ago
• biocypher / clinical-knowledge-graph
  ☆18Updated last year
• dhimmel / integrate
  Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing
  ☆33Updated 8 years ago
• elixir-europe / biohackathon-projects-2023
  Project code for BioHackathon Europe 2023.
  ☆18Updated last year
• bio2bel / kegg
  A Bio2BEL package for integrating pathway-related information from KEGG in BEL
  ☆13Updated 3 years ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago
• esacinc / PDC-Public
  The public repository for the Proteomic Data Commons UI and APIs
  ☆17Updated 2 weeks ago
• kuijjerlab / retriever
  Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data
  ☆15Updated 3 years ago
• JonnyTran / OpenOmics
  A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.
  ☆36Updated last year
• PathwayCommons / factoid
  A project to capture biological pathway data from academic papers
  ☆29Updated 8 months ago
• BaderLab / EPIC
  This is the public repository for the EPIC tool.
  ☆18Updated 3 years ago
• research-software-ecosystem / content
  A metadata commons to store research software metadata
  ☆45Updated this week
• ayushnoori / metapaths
  Similarity search in heterogeneous knowledge graphs using meta paths.
  ☆29Updated 2 years ago
• biopragmatics / bioversions
  🪝 What's the latest version for each database?
  ☆28Updated this week
• AbbVie-ComputationalGenomics / genetic-evidence-approval
  ☆26Updated 4 years ago
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆29Updated 10 months ago
• SBRG / Recon3D
  A 3-Dimensional View of Human Metabolism and Disease
  ☆31Updated 7 years ago
• vpalombo / PANEV
  PaNeV: an R package for a pathway-based network visualization
  ☆10Updated 3 months ago
• IOR-Bioinformatics / PCSF
  ☆14Updated 6 years ago
• PathwayAndDataAnalysis / causalpath
  A project for exploring differentially active signaling paths related to proteomics datasets
  ☆44Updated 4 months ago
• ncbi / GNorm2
  ☆25Updated last year
• reactome / reactome2py
  python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
  ☆34Updated last year
• krishnanlab / txt2onto
  Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.
  ☆27Updated last year
• michaelkyu / ddot
  Toolkit for constructing, analyzing, and visualizing data-driven ontologies
  ☆20Updated 6 years ago
• cssblab / iOmicsPASS
  Data Integration tool utilizing network information for predictive analyses
  ☆16Updated 7 months ago