Harmonizing pathway databases using Biological Expression Language (BEL)
☆20Jul 1, 2024Updated last year
Alternatives and similar repositories for PathMe
Users that are interested in PathMe are comparing it to the libraries listed below
Sorting:
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Feb 11, 2022Updated 4 years ago
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Nov 3, 2021Updated 4 years ago
- PyBioPAX: A python implementation of the BioPAX object model☆26May 10, 2024Updated last year
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Mar 2, 2021Updated 4 years ago
- 📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology☆32Dec 16, 2019Updated 6 years ago
- PyCTD is a Python software package to query and analyse data from the CTD database☆12Oct 6, 2022Updated 3 years ago
- JavaScript-based pathway viewer and editor☆35Feb 20, 2025Updated last year
- JSON-LD Contexts for Bioinformatics Data☆23Mar 25, 2024Updated last year
- Performs BLAST on compressed proteomic data.☆17Jun 15, 2015Updated 10 years ago
- Single sample pathway analysis tools for omics data☆13Nov 9, 2024Updated last year
- Goslin is the Grammar on succinct lipid nomenclature.☆12Nov 20, 2025Updated 3 months ago
- Pathway visualization and analysis tool for Pathway Commons and other BioPAX data☆14May 25, 2022Updated 3 years ago
- Python library (C++ backend) for degree-preserving network randomization☆14Oct 14, 2019Updated 6 years ago
- ☆15Aug 13, 2023Updated 2 years ago
- Simple analyses and tutorials on the COVID-19 Knowledge Graph☆14Apr 27, 2020Updated 5 years ago
- Repository for Apollo-SV ontology. Versioning Apollo-SV independently of the software was made easiest by having it as a separate reposi…☆11Dec 24, 2024Updated last year
- A tool to annotate human VCF files with PolyPhen2 effect measures☆10Dec 26, 2022Updated 3 years ago
- INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and datab…☆205Updated this week
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆61Feb 16, 2026Updated last week
- web based visualisation of molecular interaction data☆12May 22, 2025Updated 9 months ago
- This code allows is for diversity picking across multiple different, and potentially overlapping chemical compound classes, while at the …☆12Oct 30, 2020Updated 5 years ago
- ☆38Jan 14, 2026Updated last month
- A Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases.☆16Jul 9, 2024Updated last year
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Jul 10, 2024Updated last year
- The official PySCeS project source code repository.☆40Feb 15, 2026Updated last week
- Python module for lipidomics LC MS/MS data analysis☆20Jun 27, 2024Updated last year
- TFregulomeR reveals transcription factors’ context-specific features and functions☆15Apr 18, 2022Updated 3 years ago
- Ontology cross-reference and mapping service☆20Dec 12, 2025Updated 2 months ago
- Reproducible drug repurposing: a Python-based framework for building drug-disease association classifiers☆17May 7, 2018Updated 7 years ago
- Learning a genome-wide score of conservation at the functional genomics level between human and mouse☆14Sep 23, 2022Updated 3 years ago
- Introduction to the Bioconductor project☆19Oct 17, 2025Updated 4 months ago
- pathway based data integration and visualization☆47Mar 28, 2025Updated 10 months ago
- The Ontology for Modeling and Representation of Social Entities☆21Feb 5, 2026Updated 3 weeks ago
- Schema for chemistry ontology classes☆20Updated this week
- Semantic Similarity in Bio-Ontologies☆18Jan 30, 2026Updated last month
- CLI tool to manage the download of large quantities of files from DNAnexus☆18Feb 19, 2026Updated last week
- ☆17Mar 5, 2023Updated 2 years ago
- The Cancer bioMarker Prediction Pipeline (CAMPP)☆19Oct 25, 2020Updated 5 years ago
- The nPYc-Toolbox defines objects for representing, and implements functions to manipulate and display, metabolic profiling datasets.☆25Aug 8, 2025Updated 6 months ago