polio-nanopore / piranhaLinks
☆19Updated last week
Alternatives and similar repositories for piranha
Users that are interested in piranha are comparing it to the libraries listed below
Sorting:
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Updated this week
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Updated 9 months ago
- Build a map of genes present across a set of microbial genomes☆14Updated last month
- Whole genome core alignments from multiple draft genomes☆13Updated 8 years ago
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆32Updated 6 months ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated last month
- Automatic eukaryotic taxonomic classification☆28Updated 3 weeks ago
- UPHL's Reference Free Pipeline☆26Updated 3 weeks ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 7 months ago
- ☆16Updated 2 months ago
- Viral genome assemble and characterisation☆10Updated last year
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆14Updated last year
- Tools to analyze the differences and similarities between CRISPR arrays☆10Updated 5 months ago
- A set of scripts for calculating pairwise SNP distance☆40Updated 2 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆56Updated last year
- multiPhATE with comparative genomics☆19Updated 3 years ago
- Influenza data pipeline to automate genotyping assignment☆33Updated this week
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 3 months ago
- A Hierarchical Approach to Pangenomics Inference☆11Updated last year
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆22Updated 3 months ago
- Calculate assocations between genes and traits☆23Updated 2 months ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆22Updated 2 years ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆36Updated 2 weeks ago
- Small utility script to submit genomes to PHASTER for phage detection☆24Updated 3 years ago
- Library of sketching functions used by PopPUNK☆31Updated 2 months ago
- Strain Resolution ON Graphs☆47Updated last year
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆39Updated 3 weeks ago
- Bacterial surveillance pipeline.☆24Updated 3 weeks ago
- Plasmid analysis using rearrangement distances☆42Updated last week