dnbaker / minicoreLinks
Fast and memory-efficient clustering + coreset construction, including fast distance kernels for Bregman and f-divergences.
☆33Updated last year
Alternatives and similar repositories for minicore
Users that are interested in minicore are comparing it to the libraries listed below
Sorting:
- SeqOthello supports fast coverage query and containment query.☆12Updated 6 years ago
- ☆22Updated 9 months ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Updated 3 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆26Updated 3 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- Hierarchical binned indexed data store for on-disk genomic data.☆14Updated 7 months ago
- Index and query k-mer matrices in BGZF☆12Updated 7 years ago
- ☆14Updated 3 weeks ago
- drunk on perbase pileups and lua expressions☆19Updated 3 months ago
- ☆25Updated last week
- Johns Hopkins University student-led genomics paper discussion group☆13Updated 5 years ago
- Fast interval intersection library☆43Updated 2 weeks ago
- Hidden Markov Model based Copy number caller☆20Updated 10 months ago
- Minhash Index Extended to Knead Kmer Intersection☆11Updated 5 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- ☆15Updated last year
- nimble aligner that will map your reads to the references on a laptop☆12Updated 8 years ago
- The python binding for D4 format☆16Updated 3 years ago
- MEM mapper prototype☆13Updated 4 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Updated 4 years ago
- Optimal distance lower bound k-mer sampling.☆12Updated last year
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Updated 5 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- semi-reference-based short read compression☆11Updated 6 years ago
- ☆15Updated 3 weeks ago
- Fast and accurate set similarity estimation via containment min hash☆43Updated last year
- LAVA: Lightweight Assignment of Variant Alleles☆17Updated 7 years ago