Alternatives and similar repositories for minicore:

Users that are interested in minicore are comparing it to the libraries listed below

• COMBINE-lab / pufferfish2
  ☆15Updated last year
• LiuBioinfo / SeqOthello
  SeqOthello supports fast coverage query and containment query.
  ☆12Updated 5 years ago
• bioturing / hera-t
  Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol
  ☆17Updated 3 years ago
• kcleal / superintervals
  Fast interval intersection library
  ☆35Updated 3 weeks ago
• bioinfologics / sdg
  Sequence Distance Graph framework: graph + reads + mapping + analysis
  ☆25Updated 2 years ago
• neherlab / ffpopsim
  FFPopSim is a collection of C++ classes and a Python interface for efficient simulation of large populations, in particular when the prod…
  ☆14Updated last year
• msesia / knockoffzoom
  A flexible tool for the multi-resolution localization of causal variants across the genome
  ☆11Updated 4 years ago
• nh13 / fqme
  ☆22Updated 3 months ago
• Malfoy / Miekki
  Minhash Index Extended to Knead Kmer Intersection
  ☆11Updated 5 years ago
• COMBINE-lab / piscem-infer
  ☆14Updated last year
• jrderuiter / geneviz
  Library for visualising genomic features in Python.
  ☆15Updated 7 years ago
• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆26Updated 2 years ago
• COMBINE-lab / pyroe
  ☆16Updated 2 months ago
• vsbuffalo / hgindex
  Hierarchical binned indexed data store for on-disk genomic data.
  ☆14Updated 2 months ago
• antrec / spectrassembler
  Tool (experimental) to compute layout from overlaps with spectral algorithm
  ☆11Updated 7 years ago
• ML4GLand / SeqPro
  Genomic sequence preprocessing toolkit
  ☆12Updated 2 weeks ago
• pachterlab / MCML
  ☆33Updated 3 years ago
• kharchenkolab / vrnmf
  Volume-regularized NMF
  ☆17Updated 2 years ago
• jaudoux / kamix
  Index and query k-mer matrices in BGZF
  ☆12Updated 6 years ago
• lh3 / gwfa
  Proof-of-concept implementation of GWFA for sequence-to-graph alignment
  ☆57Updated 10 months ago
• Kingsford-Group / splitsbt
  ☆18Updated 6 years ago
• 38 / pyd4
  The python binding for D4 format
  ☆16Updated 3 years ago
• ML4GLand / SeqData
  Annotated sequence data
  ☆11Updated 2 months ago
• dib-lab / MQF
  ☆12Updated last year
• hoffmangroup / acidbio
  ☆14Updated 2 years ago
• bendemeo / hopper
  Diverse sampling for single-cell datasets
  ☆16Updated 4 years ago
• rmenegaux / fastDNA
  ☆24Updated 3 years ago
• jessicabonnie / dandd
  Tool to estimate deltas for sequence sets and answer questions about relative contribution
  ☆21Updated last week
• Daniel-Liu-c0deb0t / dlb-kmer-sampling
  Optimal distance lower bound k-mer sampling.
  ☆12Updated 9 months ago
• ratschlab / graph_annotation
  Code accompanying the publication for compressed graph annotation
  ☆13Updated 6 years ago