dnbaker / minicore
Fast and memory-efficient clustering + coreset construction, including fast distance kernels for Bregman and f-divergences.
☆33Updated last year
Related projects: ⓘ
- SeqOthello supports fast coverage query and containment query.☆12Updated 5 years ago
- ☆15Updated this week
- ☆15Updated 9 months ago
- ☆33Updated 3 years ago
- ☆14Updated 6 months ago
- FFPopSim is a collection of C++ classes and a Python interface for efficient simulation of large populations, in particular when the prod…☆12Updated last year
- ☆24Updated 2 years ago
- Application for semi-automated genomic annotation.☆13Updated 2 months ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 2 years ago
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆10Updated last year
- Accompanying repository for GkmExplain paper☆21Updated 4 years ago
- GRAph-based Finding of Individual Motif Occurrences☆27Updated 3 weeks ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated last year
- Index and query k-mer matrices in BGZF☆12Updated 6 years ago
- ECML16: GaKCo: a Fast Gapped k-mer string Kernel using Counting☆14Updated 5 years ago
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆9Updated 7 years ago
- Optimal distance lower bound k-mer sampling.☆12Updated 3 months ago
- ☆15Updated 7 months ago
- ☆12Updated 5 years ago
- Modeling and Analysis of (Statistical) Genetics data in python☆16Updated last month
- Minhash Index Extended to Knead Kmer Intersection☆11Updated 4 years ago
- ☆12Updated 11 months ago
- Library for visualising genomic features in Python.☆15Updated 7 years ago
- ☆12Updated 4 years ago
- Non-parametric structural variant genotyper☆14Updated 2 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Updated 2 years ago
- ☆10Updated 4 years ago
- ☆22Updated 2 years ago
- ☆10Updated 6 months ago
- Library for indexing VCF files for random access searches by rsID☆17Updated last year