dnbaker / minicoreLinks
Fast and memory-efficient clustering + coreset construction, including fast distance kernels for Bregman and f-divergences.
☆33Updated 2 years ago
Alternatives and similar repositories for minicore
Users that are interested in minicore are comparing it to the libraries listed below
Sorting:
- SeqOthello supports fast coverage query and containment query.☆12Updated 6 years ago
- ☆21Updated 9 months ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Updated 3 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆26Updated 3 years ago
- Fast interval intersection library☆43Updated last month
- ☆24Updated last month
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- ☆14Updated last month
- ☆24Updated 3 years ago
- Index and query k-mer matrices in BGZF☆12Updated 7 years ago
- semi-reference-based short read compression☆11Updated 6 years ago
- Optimal distance lower bound k-mer sampling.☆12Updated last year
- Hierarchical binned indexed data store for on-disk genomic data.☆13Updated 8 months ago
- MEM mapper prototype☆13Updated 4 years ago
- drunk on perbase pileups and lua expressions☆19Updated 4 months ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- ☆15Updated last year
- ☆16Updated this week
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- The python binding for D4 format☆16Updated 3 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- Hidden Markov Model based Copy number caller☆20Updated 11 months ago
- ☆24Updated 4 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- ☆15Updated last month
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆18Updated 4 years ago
- Detects human contamination in bam files☆16Updated 5 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 8 years ago