zaeleus / squabLinks
Alignment-based gene expression quantification
☆28Updated 3 weeks ago
Alternatives and similar repositories for squab
Users that are interested in squab are comparing it to the libraries listed below
Sorting:
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Updated 9 months ago
- ☆50Updated 3 years ago
- ☆57Updated 3 years ago
- FASTA and FASTQ parsing in Rust☆78Updated 6 months ago
- Command line utility for working with next-generation sequencing files.☆36Updated 2 months ago
- gia: Genomic Interval Arithmetic☆64Updated last year
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Updated 2 years ago
- Rust implmentation of VCF parser☆25Updated 2 years ago
- drunk on perbase pileups and lua expressions☆19Updated 4 months ago
- Rust UMI Directional Adjacency Deduplicator☆14Updated 5 years ago
- an API for intersections of genomic data☆75Updated this week
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- Rust bindings to minimap2 library☆101Updated last week
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Updated 10 months ago
- ☆22Updated 3 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆21Updated this week
- A FASTA/FASTQ format parser library☆20Updated last year
- bioinformatics toolkit in rust☆90Updated 3 months ago
- De Bruijn graphs in Rust☆70Updated last year
- ntHash implementation in Rust☆36Updated last year
- A genomic minhashing implementation in Rust☆98Updated 3 months ago
- Fasten toolkit, for streaming operations on fastq files☆79Updated 5 months ago
- expressions on VCFs☆85Updated 5 months ago
- ☆11Updated 3 years ago
- Fast and flexible tool for reading, modifying and writing biological sequences☆17Updated 2 months ago
- sfasta☆35Updated 4 months ago
- A high-performance BigWig and BigBed library in Rust☆101Updated 3 months ago
- bedtools-like functionality for interval sets in rust☆53Updated last month
- Single-Cell RNA-seq pseudo-aligner☆51Updated last year