Alternatives and similar repositories for squab

Users that are interested in squab are comparing it to the libraries listed below

• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated 11 months ago
• COMBINE-lab / terminus
  ☆58Updated 2 years ago
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆31Updated 4 months ago
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆13Updated 6 months ago
• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated 7 months ago
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated last year
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• ostnam / rust-wfa
  ☆11Updated 2 years ago
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆35Updated last month
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆99Updated last month
• brentp / pbr
  drunk on perbase pileups and lua expressions
  ☆18Updated 3 weeks ago
• sstadick / rumi
  Rust UMI Directional Adjacency Deduplicator
  ☆15Updated 5 years ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆62Updated 9 months ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆29Updated 10 months ago
• varfish-org / mehari
  VEP-like tool for sequence ontology and HGVS annotation of VCF files
  ☆20Updated this week
• sstadick / bam-builder
  Wrapper over rust-htslib for building collections of BAM records for testing.
  ☆11Updated last year
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆77Updated 2 months ago
• COMBINE-lab / piscem
  Rust wrapper for the next generation (still currently in C++)
  ☆25Updated this week
• aseyboldt / fastq-rs
  ☆51Updated 2 years ago
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆79Updated last month
• Picani / fastax
  Make phylogenetic trees and lineages from the NCBI Taxonomy database
  ☆13Updated 2 years ago
• jeff-k / bio-seq
  Bit-packed and well-typed biological sequences
  ☆33Updated last month
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆30Updated last year
• natir / nuc2bit
  ☆14Updated 4 years ago
• informationsea / vcf-rs
  Rust implmentation of VCF parser
  ☆23Updated 2 years ago
• annalam / seqkit
  Toolkit for manipulating FASTA and SAM files
  ☆18Updated last year
• jguhlin / sfasta
  sfasta
  ☆35Updated last month
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆90Updated last week
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆45Updated 8 months ago