zaeleus / squabLinks
Alignment-based gene expression quantification
☆31Updated 4 months ago
Alternatives and similar repositories for squab
Users that are interested in squab are comparing it to the libraries listed below
Sorting:
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- Rust implmentation of VCF parser☆25Updated 3 years ago
- Command line utility for working with next-generation sequencing files.☆37Updated 6 months ago
- ☆57Updated 3 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- FASTA and FASTQ parsing in Rust☆80Updated 9 months ago
- drunk on perbase pileups and lua expressions☆19Updated last month
- gia: Genomic Interval Arithmetic☆65Updated last year
- Fasten toolkit, for streaming operations on fastq files☆81Updated 2 months ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Updated last year
- ☆50Updated 3 years ago
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Updated 2 years ago
- ☆22Updated 3 years ago
- A FASTA/FASTQ format parser library☆20Updated last year
- Rust UMI Directional Adjacency Deduplicator☆15Updated 6 years ago
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Updated last year
- sfasta☆35Updated 8 months ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆23Updated this week
- A quality control tool for FASTQ files written in rust☆52Updated 6 months ago
- expressions on VCFs☆88Updated 8 months ago
- Fast and flexible tool for reading, modifying and writing biological sequences☆17Updated 2 months ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Updated last month
- Rust in bioinformatics and computational biology☆19Updated 3 years ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- Generate random test data for bioinformatics☆27Updated last year
- ☆12Updated 3 years ago
- Make phylogenetic trees and lineages from the NCBI Taxonomy database☆14Updated 2 years ago
- Rust bindings to minimap2 library☆102Updated 3 weeks ago
- Rust library for processing sequencing reads.☆25Updated last year
- ☆49Updated 2 years ago