ekg / ACAD18Links
Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop
☆12Updated 6 years ago
Alternatives and similar repositories for ACAD18
Users that are interested in ACAD18 are comparing it to the libraries listed below
Sorting:
- For bluntifying overlapped GFAs☆13Updated last year
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 8 years ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Ultra-efficient mapping-free structural variation genotyper☆19Updated 4 years ago
- Index and query k-mer matrices in BGZF☆12Updated 7 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 3 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆23Updated last week
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Mapping-free variant caller for short-read Illumina data☆20Updated 5 years ago
- Extracts subgraphs or components from a graph in GFA format☆25Updated last year
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- Scaffolding with RNA-seq read alignment☆21Updated 7 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 6 years ago
- Hidden Markov Model based Copy number caller☆20Updated last year
- Functions to compare a SV call sets against a truth set.☆30Updated 5 months ago
- ☆16Updated 3 years ago
- ☆28Updated 7 months ago
- ☆24Updated 2 months ago
- Example of SGTK application for E.coli dataset:☆32Updated 5 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- reference free variant assembly☆34Updated 2 years ago
- ☆12Updated 2 months ago
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆35Updated last year