Kingsford-Group / variantstore
VariantStore: A Large-Scale Genomic Variant Search Index
☆39Updated 3 years ago
Alternatives and similar repositories for variantstore
Users that are interested in variantstore are comparing it to the libraries listed below
Sorting:
- Hidden Markov Model based Copy number caller☆20Updated 6 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- ☆28Updated last month
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Variant call adjudication☆16Updated 11 months ago
- Lossless VCF compression☆18Updated 3 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- Recommended Graphtyper pipelines☆14Updated 4 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated 11 months ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last month
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Indel-aware consensus for aligned BAM☆21Updated last month
- A long read simulator based on badread idea☆22Updated 2 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Implementation of ToL genome assembly workflows☆20Updated last week
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 3 years ago
- ☆14Updated 2 years ago
- ☆12Updated 3 weeks ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last year
- ☆32Updated 2 years ago
- General purpose utility related to GAF files☆24Updated last month
- ☆14Updated last year
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago