Kingsford-Group / variantstoreLinks
VariantStore: A Large-Scale Genomic Variant Search Index
☆39Updated 4 years ago
Alternatives and similar repositories for variantstore
Users that are interested in variantstore are comparing it to the libraries listed below
Sorting:
- Contains the description of a file format to store kmers and associated values☆34Updated 3 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- ☆28Updated 9 months ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Hidden Markov Model based Copy number caller☆20Updated last month
- ☆24Updated 4 months ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 6 months ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 9 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Parallel Sequence to Graph Alignment☆36Updated 3 years ago
- Split a BAM file by haplotype support☆16Updated 8 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- Indel-aware consensus for aligned BAM☆21Updated 5 months ago
- Lossless VCF compression☆21Updated 3 years ago
- ☆15Updated 3 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 3 months ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated 8 months ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated 2 years ago