rrwick / August-2019-consensus-accuracy-update
A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies
☆58Updated 5 years ago
Alternatives and similar repositories for August-2019-consensus-accuracy-update:
Users that are interested in August-2019-consensus-accuracy-update are comparing it to the libraries listed below
- Pipeline to convert a haploid assembly into diploid☆100Updated last month
- A tool for Racon polishing of miniasm assemblies☆73Updated 4 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆40Updated 3 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated 11 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆106Updated this week
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆77Updated 3 months ago
- Synteny Imager☆60Updated 6 months ago
- Long-read mock community experiments☆104Updated 3 years ago
- ☆80Updated last year
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆71Updated 3 years ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆34Updated this week
- ☆76Updated 3 weeks ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- ONT assembly and Illumina polishing pipeline☆91Updated 4 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- ☆76Updated 4 years ago
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆78Updated 4 years ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- IS mapping software☆53Updated 3 years ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 4 years ago
- Reference-free profiling of polyploid genomes☆112Updated 8 months ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- High-quality Nanopore-only genome polisher☆69Updated 7 months ago
- Show pangenome graphs in an easy way☆55Updated 2 years ago
- ☆61Updated last week
- A list of software for pangenomics☆105Updated 2 weeks ago
- Interactive quality assessment of genome assemblies☆96Updated last week
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year