rrwick / August-2019-consensus-accuracy-updateLinks
A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies
☆60Updated 6 years ago
Alternatives and similar repositories for August-2019-consensus-accuracy-update
Users that are interested in August-2019-consensus-accuracy-update are comparing it to the libraries listed below
Sorting:
- A tool for Racon polishing of miniasm assemblies☆78Updated 5 months ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆55Updated last year
- tools for assessing the accuracy of genome assemblies☆35Updated last year
- Pipeline to convert a haploid assembly into diploid☆111Updated last year
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆107Updated 3 weeks ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆41Updated 4 months ago
- ☆81Updated 5 years ago
- Long-read mock community experiments☆104Updated 4 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆46Updated 5 years ago
- ☆84Updated 2 years ago
- High-quality Nanopore-only genome polisher☆69Updated last year
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- A tool for removing redundant genomes from a set of assemblies☆78Updated 5 months ago
- Synteny Imager☆65Updated last month
- k-mer learning materials☆83Updated 11 months ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆90Updated last year
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆77Updated 4 years ago
- ONT assembly and Illumina polishing pipeline☆87Updated 5 years ago
- Call select base modifications in PacBio HiFi reads☆15Updated 3 months ago
- Split Kmer Analysis☆67Updated 3 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 5 years ago
- Assembly statistic visualisation☆94Updated 2 years ago
- A tool for fetching nanopore fast5 files after filtering via demultiplexing, alignment, or other, to improve downstream processing effici…☆13Updated 6 years ago
- A fast tool for hybrid genome assembly of long and short reads☆78Updated 5 years ago
- Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.☆27Updated last year
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆64Updated 5 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆128Updated 2 months ago