nanoporetech / pipeline-structural-variationLinks
Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
☆114Updated 3 years ago
Alternatives and similar repositories for pipeline-structural-variation
Users that are interested in pipeline-structural-variation are comparing it to the libraries listed below
Sorting:
- pbsv - PacBio structural variant (SV) calling and analysis tools☆156Updated 6 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188Updated last year
- Jasmine: SV Merging Across Samples☆223Updated 8 months ago
- Structural Variant Identification Method using Long Reads☆173Updated 4 years ago
- software tools for haplotype assembly from sequence data☆223Updated 6 months ago
- Research release basecalling models and configurations☆115Updated 3 months ago
- Tools for plotting methylation data in various ways☆160Updated 2 weeks ago
- ☆132Updated last week
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆172Updated last year
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆145Updated last month
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Graph realignment tools for structural variants☆160Updated 2 years ago
- Hierarchical Alignment Format☆171Updated 7 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆156Updated 2 years ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆141Updated last month
- A tool for somatic structural variant calling using long reads☆144Updated 2 weeks ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆123Updated 3 weeks ago
- Bayesian genotyper for structural variants☆134Updated 4 years ago
- accurate LiftOver tool for new genome assemblies☆134Updated last year
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆104Updated 2 months ago
- A minimap2 frontend for PacBio native data formats☆202Updated 6 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- SV caller for nanopore data☆91Updated 5 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- ☆123Updated 3 weeks ago
- Pangenome-based genome inference☆139Updated 3 weeks ago
- Python programs for processing GFF3 files☆99Updated last year
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆115Updated last month