Alternatives and similar repositories for pipeline-structural-variation:

Users that are interested in pipeline-structural-variation are comparing it to the libraries listed below

• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆132Updated 3 months ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆202Updated last month
• epi2me-labs / wf-human-variation
  ☆110Updated last week
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆183Updated 8 months ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆140Updated last year
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆172Updated 3 years ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆114Updated last week
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆107Updated 7 months ago
• epi2me-labs / wf-transcriptomes
  ☆84Updated last month
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆96Updated 10 months ago
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆140Updated 3 months ago
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆101Updated 2 months ago
• PacificBiosciences / pbmm2
  A minimap2 frontend for PacBio native data formats
  ☆181Updated 2 months ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆121Updated this week
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆156Updated last year
• nanoporetech / pipeline-transcriptome-de
  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
  ☆107Updated 2 years ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆195Updated last year
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆135Updated 3 weeks ago
• wdecoster / chopper
  ☆169Updated this week
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆202Updated 3 months ago
• eldariont / svim
  Structural Variant Identification Method using Long Reads
  ☆158Updated 3 years ago
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆217Updated last month
• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆169Updated 2 weeks ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆96Updated last year
• tangerzhang / ALLHiC
  ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
  ☆174Updated 3 months ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆143Updated 2 years ago
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆91Updated 4 years ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆96Updated last year
• GoekeLab / sg-nex-data
  Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
  ☆115Updated last month