Alternatives and similar repositories for pipeline-structural-variation:

Users that are interested in pipeline-structural-variation are comparing it to the libraries listed below

• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆184Updated 10 months ago
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆142Updated last month
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆209Updated 3 months ago
• epi2me-labs / wf-transcriptomes
  ☆90Updated 3 months ago
• epi2me-labs / wf-human-variation
  ☆118Updated this week
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆147Updated 2 years ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆110Updated 9 months ago
• nanoporetech / pipeline-transcriptome-de
  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
  ☆108Updated 2 years ago
• parklab / bamsnap
  ☆119Updated 5 months ago
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆101Updated this week
• rrwick / Deepbinner
  a signal-level demultiplexer for Oxford Nanopore reads
  ☆125Updated 4 years ago
• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆183Updated this week
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆160Updated last year
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆124Updated this week
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆127Updated this week
• ruanjue / smartdenovo
  Ultra-fast de novo assembler using long noisy reads
  ☆135Updated 4 years ago
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆145Updated last week
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆113Updated 3 months ago
• tobiasrausch / alfred
  BAM Statistics, Feature Counting and Annotation
  ☆148Updated last month
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆91Updated 4 years ago
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆140Updated 5 months ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆97Updated last year
• parklab / xTea
  Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
  ☆108Updated last month
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆173Updated 3 years ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆210Updated this week
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆95Updated last year
• BoevaLab / FREEC
  Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
  ☆159Updated 7 months ago
• eldariont / svim
  Structural Variant Identification Method using Long Reads
  ☆170Updated 3 years ago
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆204Updated 2 years ago