nanoporetech / pipeline-nanopore-denovo-isoforms
Pipeline for de novo clustering of long transcriptomic reads
☆26Updated 3 years ago
Alternatives and similar repositories for pipeline-nanopore-denovo-isoforms:
Users that are interested in pipeline-nanopore-denovo-isoforms are comparing it to the libraries listed below
- Methylation Phasing for Nanopore Sequencing☆46Updated last year
- Error correction of ONT transcript reads☆59Updated last year
- WDL workflows for variant calling and assembly using ONT☆32Updated 2 weeks ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 4 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated this week
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 2 years ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆34Updated 2 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated last month
- Toolkit for calling structural variants using short or long reads☆100Updated 2 weeks ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Structural variant caller☆54Updated 3 years ago
- ☆27Updated this week
- Remove lambda phage reads from a fastq file☆28Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆58Updated 4 months ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆35Updated 2 weeks ago
- ☆46Updated 3 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated 11 months ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- ☆37Updated this week
- ☆24Updated 3 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆40Updated 3 months ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated last year
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 3 years ago
- perSVade: personalized Structural Variation detection☆38Updated 2 months ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Set of tools to manipulate and visualize modified base bam files☆50Updated 2 years ago
- A tool for de novo clustering of long transcriptomic reads☆15Updated 2 years ago