laduplessis / skylinetoolsLinks
Utilities and distributions for (birth-death) skyline models.
☆10Updated 6 years ago
Alternatives and similar repositories for skylinetools
Users that are interested in skylinetools are comparing it to the libraries listed below
Sorting:
- ☆19Updated 4 years ago
- R tools for posterior analyses using BEAST☆20Updated 6 years ago
- ☆19Updated last month
- Coalescent simulation and likelihood for phylodynamic inference☆14Updated 7 months ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Updated last year
- babette is an R package to work with BEAST2☆46Updated last week
- Molecular Epidemiology of Viruses in R☆19Updated 10 years ago
- A textbook for phylogenetic comparative methods.☆43Updated 6 years ago
- Racmacs R package for performing antigenic cartography☆24Updated last year
- ☆36Updated last year
- Calculate distances between phylogenetic trees in R☆35Updated last month
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated 3 weeks ago
- Analysis of Phylogenetics and Evolution☆73Updated 6 months ago
- A Toolbox for Manipulating Biological Sequences in R☆26Updated 2 months ago
- ☆11Updated 7 months ago
- Compute various quantitative genetics parameters from a Generalised Linear Mixed Model (GLMM) estimates. Especially, it yields the observ…☆16Updated 11 months ago
- Scalable relaxed clock phylogenetic dating☆27Updated 3 months ago
- Explore spaces of phylogenetic trees☆29Updated 4 months ago
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆25Updated 4 months ago
- Disease outbreak reconstruction from epidemiological and genetic data☆35Updated last week
- R We There Yet?☆32Updated 9 months ago
- A package containing several useful R-functions for reading and plotting the results of Birth-Death Skyline (BDSKY) runs in BEAST2.☆11Updated 7 years ago
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆21Updated 2 years ago
- R package to run BEAST2☆11Updated 3 weeks ago
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆57Updated last year
- A course in the theory and practice of phylogenetic inference from DNA sequence data☆31Updated 8 months ago
- ☆11Updated 10 months ago
- ☆20Updated 2 years ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Updated 6 years ago
- An Amazing Shiny App☆17Updated 4 years ago