yongzhiyang2012 / genome_analysis
☆15Updated 5 years ago
Alternatives and similar repositories for genome_analysis:
Users that are interested in genome_analysis are comparing it to the libraries listed below
- Pan-genome Construction and Population Structure Variation Calling pipeline☆38Updated 6 months ago
- ☆24Updated 3 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆19Updated last year
- scripts☆15Updated 6 years ago
- Scripts that used in our chicken T2T manuscript.☆19Updated last year
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆31Updated 5 months ago
- ☆20Updated 7 months ago
- ☆23Updated last year
- ☆29Updated 2 months ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆27Updated 2 months ago
- Some useful gadgets☆10Updated 3 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆25Updated 3 months ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆37Updated 9 months ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆26Updated 2 years ago
- ☆14Updated 4 years ago
- Genome haplotype assembly and assessment method☆12Updated last year
- Codes for the lettuce resequencing project in 2020☆30Updated 3 years ago
- This is a method to find telomeres and centromeres in plants.☆39Updated last year
- ☆29Updated 7 months ago
- Analyses of sex chromosome evolution in songbirds☆15Updated 5 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆37Updated 2 weeks ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆23Updated 3 weeks ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆27Updated 2 months ago
- Dynamic Elongation of a Genome Assembly Path☆21Updated 10 months ago
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Updated 4 years ago
- Scripts and procedures for detecting positively selected genes and codons in primates☆19Updated 4 years ago
- Use hifi to assembly the Sol genome, and dissecting Sol evo☆17Updated last year