yongzhiyang2012 / genome_analysisLinks
☆15Updated 5 years ago
Alternatives and similar repositories for genome_analysis
Users that are interested in genome_analysis are comparing it to the libraries listed below
Sorting:
- Pan-genome Construction and Population Structure Variation Calling pipeline☆43Updated last year
- Useful bioinformatic scripts☆57Updated 9 months ago
- ☆14Updated 5 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated 11 months ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆47Updated 3 weeks ago
- Plant genome assembly and annotation pipeline using snakemake☆47Updated 4 months ago
- Scripts and procedures for detecting positively selected genes and codons in primates☆21Updated 4 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated 3 weeks ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆39Updated 3 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆68Updated 4 years ago
- scripts☆18Updated 6 years ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆26Updated 2 years ago
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆31Updated 8 months ago
- Genome annotation pipeline☆61Updated last year
- Bulked-Segregant Analysis using vcf file with or without parents☆29Updated 8 months ago
- ☆40Updated 2 years ago
- ☆77Updated 5 years ago
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆58Updated last year
- Some useful gadgets☆10Updated 3 years ago
- ☆42Updated last year
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆42Updated this week
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- DNA序列比对结果 可视化展示工具☆54Updated 2 years ago
- ☆24Updated 2 years ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆48Updated 4 months ago
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆28Updated last year
- BITACORA: A Bioinformatics tool for gene family annotation☆47Updated 3 months ago