yongzhiyang2012 / genome_analysis
☆14Updated 5 years ago
Alternatives and similar repositories for genome_analysis:
Users that are interested in genome_analysis are comparing it to the libraries listed below
- Pan-genome Construction and Population Structure Variation Calling pipeline☆36Updated 4 months ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 3 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆25Updated 3 weeks ago
- ☆22Updated 2 years ago
- scripts☆15Updated 6 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Scripts that used in our chicken T2T manuscript.☆19Updated last year
- Pipelines and scripts for analysing RNA-seq，genome and other sequecing data.☆9Updated 5 years ago
- ☆13Updated 4 years ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆30Updated 3 months ago
- ☆23Updated last year
- ☆21Updated 2 years ago
- Centromics: visualing centromeres with multiple omics data☆22Updated 2 months ago
- Scripts of population genomics analysis☆35Updated 6 years ago
- ☆24Updated 3 years ago
- ☆16Updated 3 months ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆37Updated 6 months ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆34Updated 2 weeks ago
- ☆28Updated 2 weeks ago
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆17Updated 7 months ago
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆24Updated 2 weeks ago
- A tool for performing collinearity-incorporating homology inference☆28Updated last year
- Genome haplotype assembly and assessment method☆11Updated last year
- Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.☆11Updated 4 years ago
- ☆24Updated 2 years ago
- Pooled Sequencing Analysis for Sex Signal☆11Updated 3 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆25Updated 6 years ago
- ☆21Updated 10 months ago
- ☆24Updated 7 years ago