Alternatives and similar repositories for genome_analysis

Users that are interested in genome_analysis are comparing it to the libraries listed below

• Zhanmengtao / bin
  scripts
  ☆21Updated 7 years ago
• chensole / bioinformatics
  ☆14Updated 5 years ago
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆45Updated last year
• Sunhh / NGS_data_processing
  Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.
  ☆56Updated last month
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆69Updated 4 years ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆51Updated 7 months ago
• sc-zhang / AlleleFinder
  AlleleFinder is a tool for identifying allele genes from polyploid genome.
  ☆35Updated last week
• ShiuLab / PseudogenePipeline
  ☆41Updated 2 years ago
• xiekunwhy / bsa
  Bulked-Segregant Analysis using vcf file with or without parents
  ☆31Updated last year
• qiao-xin / Scripts_for_GB
  The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".
  ☆29Updated 4 years ago
• liushoucheng / SPART
  a Semi-automated pipeline for assembling T2T genome
  ☆25Updated 2 months ago
• wk8910 / bio_tools
  Useful bioinformatic scripts
  ☆58Updated last year
• JiaoLab2021 / varigraph
  An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes
  ☆44Updated 3 months ago
• sjteresi / TE_Density
  Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…
  ☆35Updated last year
• JM-SONG / GenomeSyn
  ☆26Updated 3 years ago
• hewm2008 / RectChr
  Multi-level visualization of genomic statistical variables on rectangular chromosomes
  ☆43Updated last month
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆42Updated 4 years ago
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆39Updated 7 years ago
• wen-chen / naughty_monkey
  Some useful gadgets
  ☆10Updated 3 years ago
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆33Updated 2 years ago
• baozg / Potato_C88
  Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning
  ☆28Updated last year
• simon19891216 / CentIER
  ☆42Updated 5 months ago
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆25Updated 9 months ago
• YangJianshun / LINKVIEW2
  DNA序列比对结果 可视化展示工具
  ☆57Updated 3 years ago
• hewm2008 / VCF2Dis
  VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files
  ☆51Updated 4 months ago
• Immortal2333 / Haplotype_Genome_Assembly
  Genome haplotype assembly and assessment method
  ☆12Updated 2 years ago
• ShuaiNIEgithub / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆20Updated last year
• JiaoLab2021 / EVG
  A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads
  ☆49Updated 3 months ago
• HongboDoll / TomatoSuperPanGenome
  Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…
  ☆66Updated 2 months ago
• lurebgi / chicken-T2T
  Scripts that used in our chicken T2T manuscript.
  ☆22Updated 2 years ago