Alternatives and similar repositories for genome_analysis

Users that are interested in genome_analysis are comparing it to the libraries listed below

• qiao-xin / Scripts_for_GB
  The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".
  ☆28Updated 4 years ago
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆42Updated 11 months ago
• sc-zhang / AlleleFinder
  AlleleFinder is a tool for identifying allele genes from polyploid genome.
  ☆31Updated 8 months ago
• Zhanmengtao / bin
  scripts
  ☆18Updated 6 years ago
• wk8910 / bio_tools
  Useful bioinformatic scripts
  ☆58Updated 9 months ago
• chensole / bioinformatics
  ☆14Updated 5 years ago
• xiekunwhy / bsa
  Bulked-Segregant Analysis using vcf file with or without parents
  ☆29Updated 8 months ago
• robinvanderlee / positive-selection
  Scripts and procedures for detecting positively selected genes and codons in primates
  ☆21Updated 4 years ago
• sjteresi / TE_Density
  Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…
  ☆34Updated 11 months ago
• Sunhh / NGS_data_processing
  Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.
  ☆55Updated last week
• meiyang12 / Genome-annotation-pipeline
  Genome annotation pipeline
  ☆60Updated last year
• JiaoLab2021 / varigraph
  An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes
  ☆37Updated 2 months ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆41Updated 4 years ago
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆67Updated 4 years ago
• hillerlab / GeneLossPipe
  ☆24Updated 2 years ago
• hewm2008 / RectChr
  Multi-level visualization of genomic statistical variables on rectangular chromosomes
  ☆40Updated last week
• wen-chen / naughty_monkey
  Some useful gadgets
  ☆10Updated 3 years ago
• ShiuLab / PseudogenePipeline
  ☆40Updated 2 years ago
• Immortal2333 / Haplotype_Genome_Assembly
  Genome haplotype assembly and assessment method
  ☆12Updated last year
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆46Updated 3 months ago
• YangJianshun / LINKVIEW2
  DNA序列比对结果 可视化展示工具
  ☆54Updated 2 years ago
• JM-SONG / GenomeSyn
  ☆25Updated 3 years ago
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆32Updated last year
• JiangYuLab / CNVcaller
  ☆42Updated last year
• jingwanglab / Widespread-linked-selection
  Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.
  ☆11Updated 5 years ago
• wangyibin / CPhasing
  C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.
  ☆50Updated last month
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆47Updated 2 months ago
• dongwei1220 / EasySpeciesTree
  Easily construct the ML species tree with single-copy gene shared by different species.
  ☆27Updated 6 years ago
• Jwindler / AutoHiC
  A novel genome assembly pipeline based on deep learning
  ☆64Updated 8 months ago
• tsackton / ratite-genomics
  Scripts and other material for the assembly and analysis of ratite genomes.
  ☆26Updated 2 years ago