Alternatives and similar repositories for bioinformatics:

Users that are interested in bioinformatics are comparing it to the libraries listed below

• qiao-xin / Scripts_for_GB
  The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".
  ☆28Updated 3 years ago
• linyuiz / zgtools
  zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.
  ☆27Updated last month
• xiekunwhy / bsa
  Bulked-Segregant Analysis using vcf file with or without parents
  ☆25Updated 2 months ago
• tsackton / ratite-genomics
  Scripts and other material for the assembly and analysis of ratite genomes.
  ☆26Updated 2 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆38Updated 3 years ago
• Jwindler / AutoHiC
  A novel genome assembly pipeline based on deep learning
  ☆60Updated 2 months ago
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆37Updated 5 months ago
• Sunhh / NGS_data_processing
  Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.
  ☆52Updated this week
• yongzhiyang2012 / genome_analysis
  ☆15Updated 5 years ago
• Zhanmengtao / bin
  scripts
  ☆15Updated 6 years ago
• Wendellab / CisTransRegulation
  Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum
  ☆16Updated last year
• hewm2008 / VCF2Dis
  VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files
  ☆36Updated 2 weeks ago
• Immortal2333 / Haplotype_Genome_Assembly
  Genome haplotype assembly and assessment method
  ☆12Updated last year
• dongwei1220 / EasySpeciesTree
  Easily construct the ML species tree with single-copy gene shared by different species.
  ☆25Updated 6 years ago
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆43Updated 10 months ago
• lurebgi / chicken-T2T
  Scripts that used in our chicken T2T manuscript.
  ☆19Updated last year
• meiyang12 / Genome-annotation-pipeline
  Genome annotation pipeline
  ☆56Updated 7 months ago
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆28Updated last year
• Iceylee / NGS-Pacbio
  Pipelines and scripts for analysing RNA-seq，genome and other sequecing data.
  ☆9Updated 5 years ago
• yiliao1022 / Pepper3Dgenome
  ☆15Updated 2 years ago
• HongboDoll / TomatoSuperPanGenome
  Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…
  ☆50Updated 8 months ago
• popgenome / lettuce2020
  Codes for the lettuce resequencing project in 2020
  ☆28Updated 3 years ago
• byemaxx / callCodeml
  This is used to call Codeml to calculate the positive selection of gene in Branch-Sites Model.(Require codon sequence)
  ☆16Updated 3 years ago
• YangJianshun / LINKVIEW2
  DNA序列比对结果 可视化展示工具
  ☆45Updated 2 years ago
• junjunlab / GetTransTool
  Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.
  ☆20Updated 2 years ago
• JiaoLab2021 / EVG
  A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads
  ☆37Updated 7 months ago
• SwiftSeal / resistify
  Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…
  ☆29Updated last week
• Immortal2333 / Telomeres_and_Centromeres
  This is a method to find telomeres and centromeres in plants.
  ☆37Updated last year
• jkimlab / PAPipe
  ☆30Updated last year
• pinbo / SNP_Primer_Pipeline
  ☆21Updated 2 years ago