guyleonard / orthomcl_tools
A couple of tools I find indispensable for post orthomcl down-stream analysis.
☆11Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for orthomcl_tools
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆35Updated last year
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 2 years ago
- ☆18Updated 2 months ago
- transposable element typing pipeline☆16Updated 8 months ago
- This is the Haplotypo repository☆20Updated 5 months ago
- R-package: Calculation of haplotype blocks and libraries☆27Updated 7 months ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆28Updated 9 years ago
- ☆15Updated 6 years ago
- Find Unique genomic Regions☆29Updated this week
- BESST - scaffolder for genomic assemblies☆57Updated last year
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Updated last year
- Hitting associations with k-mers☆46Updated 2 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆16Updated 5 years ago
- profile the repeat landscape in a genome☆15Updated 10 years ago
- MIRA sequence assembler☆27Updated 5 years ago
- ☆21Updated 5 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- scripts to parse and analyse MCScanX collinearity output☆29Updated 4 years ago
- catalog for long-read sequencing tools☆32Updated last year
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 4 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated last year
- A sparse k-mer graph based, memory-efficient genome assembler.☆10Updated 6 years ago
- Whole genome core alignments from multiple draft genomes☆12Updated 8 years ago
- ☆28Updated last year
- Fast in-silico normalization algorithm for NGS data☆22Updated 3 years ago
- A battery of methylation tools for PacBio HiFi reads☆28Updated 2 months ago
- genomic alignment similarity search tool☆19Updated 5 months ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Updated 5 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆31Updated 3 weeks ago