mcstitzer / maize_v4_TE_annotation
scripts and intermediate files used to annotate TEs in Jiao et al.
☆35Updated 6 years ago
Alternatives and similar repositories for maize_v4_TE_annotation:
Users that are interested in maize_v4_TE_annotation are comparing it to the libraries listed below
- Transposable element polymorphism identification☆33Updated 4 years ago
- ☆24Updated 7 years ago
- ☆24Updated 2 weeks ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆29Updated 3 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- Likelihood-based Selective Sweep Detection☆37Updated last year
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆24Updated 4 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆32Updated 2 years ago
- ☆16Updated 3 months ago
- A box of genomics tools☆21Updated 4 years ago
- ☆14Updated 5 years ago
- A shiny application to visualize MCscan result☆34Updated 2 years ago
- ☆43Updated 8 years ago
- read and analyse RepeatMasker output☆24Updated last year
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated 3 weeks ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆36Updated 4 months ago
- Plant genome assembly and annotation pipeline using snakemake☆37Updated last year
- Transposable Elements MOvement detection using LOng reads☆21Updated 2 months ago
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- Codes for the lettuce resequencing project in 2020☆28Updated 3 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆20Updated 4 years ago
- De novo annotation of young retrotransposons☆46Updated 2 years ago
- ☆32Updated 4 years ago
- A (very) simple script to QC Hi-C data.☆25Updated last month
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year