mcstitzer / maize_v4_TE_annotationLinks
scripts and intermediate files used to annotate TEs in Jiao et al.
☆35Updated 7 years ago
Alternatives and similar repositories for maize_v4_TE_annotation
Users that are interested in maize_v4_TE_annotation are comparing it to the libraries listed below
Sorting:
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- Likelihood-based Selective Sweep Detection☆39Updated last year
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- ☆14Updated 5 years ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- ☆42Updated last year
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- A box of genomics tools☆21Updated 4 years ago
- scripts for the project of seven thaliana genomes assembly☆40Updated 4 years ago
- ☆26Updated 4 months ago
- Tools and Utilities for msmc and msmc2☆48Updated last year
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆17Updated 6 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- An easy way to run BioNano genomic analysis☆27Updated 4 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 6 years ago
- ☆30Updated 5 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- ☆16Updated 9 months ago
- ☆21Updated 5 years ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆44Updated 2 months ago
- ☆32Updated 4 years ago
- ☆22Updated 6 years ago
- Infer demographic history with the Moran model☆47Updated last month
- Tutorial on using popular tools for learning about population history☆51Updated 6 years ago
- R package to draw syntenic plots in 3 different styles☆41Updated last year