Scripts and procedures for detecting positively selected genes and codons in primates
☆22Nov 14, 2020Updated 5 years ago
Alternatives and similar repositories for positive-selection
Users that are interested in positive-selection are comparing it to the libraries listed below
Sorting:
- issues for semina "Data Visulization"☆13Dec 23, 2025Updated 2 months ago
- ☆25Nov 29, 2022Updated 3 years ago
- ☆15Nov 11, 2019Updated 6 years ago
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆11May 16, 2021Updated 4 years ago
- Phylogenetic iDentification of Subgenomes☆10Jul 7, 2022Updated 3 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆35Feb 4, 2026Updated 3 weeks ago
- Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.☆11Feb 15, 2020Updated 6 years ago
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- ☆13Jan 20, 2026Updated last month
- Evolutionary Bioinformatics Toolkit (EBT)☆12Jul 14, 2020Updated 5 years ago
- Script to help assessing the evolutionary history of a TE family☆16Sep 5, 2019Updated 6 years ago
- Analyses of sex chromosome evolution in songbirds☆16Jun 15, 2019Updated 6 years ago
- ☆17Oct 21, 2024Updated last year
- Scripts used in the annotation of B10K genomes☆15Jun 1, 2020Updated 5 years ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆27Jan 18, 2023Updated 3 years ago
- Assemble and following pipeline used in wisent genome paper.☆17Dec 23, 2016Updated 9 years ago
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Nov 20, 2017Updated 8 years ago
- Annotate Olfactory receptor CDS from genome☆10Apr 29, 2023Updated 2 years ago
- Source code from Zhang et al., (2014) Genomic data of avian phylogenomics project. GigaScience 3:26☆37Dec 21, 2023Updated 2 years ago
- paml documentation and tutorials☆68Jan 9, 2026Updated last month
- Tools for working with second gen assemblies, fasta sequences, etc☆95Sep 8, 2016Updated 9 years ago
- AnceTran2.0: R package for transcriptome evolution analysis based on RNA-seq expression data or ChIP-seq TF-binding data☆11May 19, 2019Updated 6 years ago
- ☆26Jan 26, 2026Updated last month
- ☆13Nov 15, 2017Updated 8 years ago
- Code for TAD_SV project☆11Mar 16, 2022Updated 3 years ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Jan 12, 2024Updated 2 years ago
- ☆12Feb 16, 2026Updated 2 weeks ago
- ☆11Sep 1, 2022Updated 3 years ago
- Calculate the dn/ds (also pn and ps) value of cds☆13Jul 11, 2020Updated 5 years ago
- ☆12Dec 15, 2020Updated 5 years ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- Newick tree processing☆13Feb 22, 2026Updated last week
- The complete sequence of a Chinese individual☆11Oct 8, 2024Updated last year
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Jul 21, 2021Updated 4 years ago
- This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.☆25Feb 22, 2019Updated 7 years ago
- Dot2dot: Accurate Whole-Genome Tandem Repeats Discovery☆11Oct 5, 2022Updated 3 years ago
- Infer demographic history with the Moran model☆51Jun 14, 2025Updated 8 months ago
- Killifish genomics scripts☆12Feb 19, 2021Updated 5 years ago