robinvanderlee / positive-selectionLinks
Scripts and procedures for detecting positively selected genes and codons in primates
☆21Updated 5 years ago
Alternatives and similar repositories for positive-selection
Users that are interested in positive-selection are comparing it to the libraries listed below
Sorting:
- ☆24Updated 2 years ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- Useful bioinformatic scripts☆58Updated 11 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆44Updated last year
- Bulked-Segregant Analysis using vcf file with or without parents☆31Updated 10 months ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆33Updated 2 weeks ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated this week
- Scripts and other material for the assembly and analysis of ratite genomes.☆26Updated 2 years ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆50Updated 2 months ago
- ☆42Updated last year
- Codes for the lettuce resequencing project in 2020☆31Updated 4 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Updated 4 years ago
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆59Updated 2 weeks ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆27Updated 7 years ago
- A (very) simple script to QC Hi-C data.☆26Updated 11 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- read and analyse RepeatMasker output☆27Updated 2 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 6 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆49Updated 5 months ago
- Plant genome assembly and annotation pipeline using snakemake☆48Updated 6 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 7 years ago
- ☆41Updated 2 years ago
- ☆39Updated 3 months ago
- Portable solution to generate genome alignment chains using lastz☆59Updated last month
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago