AntonelliLab / seqcap_processorLinks
Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
☆23Updated 2 years ago
Alternatives and similar repositories for seqcap_processor
Users that are interested in seqcap_processor are comparing it to the libraries listed below
Sorting:
- Recovering genes from targeted sequence capture data☆130Updated 5 months ago
- Methods for examining PCA locally along the genome.☆86Updated last year
- Automated de novo assembly of whole chloroplast genomes.☆47Updated last year
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Updated last year
- Calculate summary statistics and manipulate multiple sequence alignments☆90Updated last year
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆118Updated 2 years ago
- biodiversity genomics course by Nicol Rueda, Karin Näsvall, Fernando Seixas and Joana Meier from the Wellcome Sanger Institute☆64Updated last week
- Automatically exported from code.google.com/p/jmodeltest2☆82Updated 4 years ago
- a bash pipeline for RAD sequencing☆55Updated 10 months ago
- RADseq workflow using STACKS☆61Updated 2 weeks ago
- SambaR: Snp datA Management and Basic Analyses in R☆32Updated last month
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated 3 weeks ago
- Tutorial about R package PopGenome☆44Updated 6 years ago
- Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file☆73Updated last year
- Repository for speciation genomics website☆27Updated 3 months ago
- Synteny Imager☆65Updated last month
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- Interim data for the Darwin Tree of Life Project☆33Updated 5 years ago
- Helper scripts for processing and visualization of phylogenetics datasets☆30Updated last year
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆110Updated last week
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆68Updated last month
- Software for painlessly estimating average nucleotide diversity within and between populations☆148Updated last month
- EasyCodeML: A visual tool for analysis of selection using CodeML☆83Updated 2 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Best-fit model selection☆85Updated last year
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆35Updated 2 years ago
- Using ggtree to build phylogenetic trees☆50Updated last year
- A library for running k-mers based GWAS☆122Updated last year