Alternatives and similar repositories for SortaDate

Users that are interested in SortaDate are comparing it to the libraries listed below

• FePhyFoFum / quartetsampling
  Quartet Sampling method for phylogenetic branch support evaluation
  ☆18Updated last year
• esayyari / DiscoVista
  ☆39Updated last year
• LarsNauheimer / HybPhaser
  Workflow to detect and phase hybrids in target capture data
  ☆19Updated 2 years ago
• lutteropp / QuartetScores
  Code for computing various support scores for internodes
  ☆19Updated 5 years ago
• rufimov / ParalogWizard
  ☆13Updated 2 months ago
• AlexKnyshov / alibaseq
  Alignment-Based Sequence extraction
  ☆15Updated 3 years ago
• clairemerot / angsd_pipeline
  ☆26Updated last year
• meganlsmith / delimitR
  This repository contains the code and manual for the R package delimitR.
  ☆17Updated 3 years ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆28Updated last month
• ribailey / gghybrid
  R package for analysis of hybrids and hybrid zones
  ☆21Updated last year
• mmatschiner / snapp_prep
  Prepare XML input files for divergence-time estimation with SNAPP
  ☆19Updated 2 years ago
• lmcai / Coalescent_simulation_and_gene_flow_detection
  R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency
  ☆10Updated 2 years ago
• Tom-Jenkins / utility_scripts
  Scripts for population genetics analysis
  ☆20Updated 2 years ago
• pblischak / HyDe
  Hybridization detection using phylogenetic invariants
  ☆47Updated 7 months ago
• ForBioPhylogenomics / tutorials
  Tutorials on phylogenomic analyses for the ForBio Phylogenomics course
  ☆37Updated last year
• MaoYafei / TREEasy
  A tool to infer species tree and phylogenetic network from multilocus data
  ☆32Updated 4 years ago
• jbpease / dfoil
  DFOIL: Introgression Testing for Five Taxa
  ☆32Updated 4 years ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆41Updated 6 years ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆59Updated 7 months ago
• rbouckaert / starbeast3
  ☆18Updated 8 months ago
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆45Updated 8 months ago
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆52Updated 2 years ago
• melisaolave / SNPs2CF
  An R function to compute Concordance Factors from SNP datasets
  ☆14Updated 6 months ago
• mossmatters / MJPythonNotebooks
  Visualizing gene tree conflict using Phyparts, and ETE3
  ☆14Updated last year
• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆21Updated 2 years ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆34Updated last year
• BenoitMorel / ParGenes
  A massively parallel tool for model selection and tree inference on thousands of genes
  ☆49Updated last year
• JosephCrispell / homoplasyFinder
  A tool to identify and annotate homoplasies on a phylogeny and sequence alignment
  ☆20Updated 4 years ago
• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆24Updated last year
• sudmantlab / loco-pipe
  loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…
  ☆17Updated 2 weeks ago