Alternatives and similar repositories for Captus

Users that are interested in Captus are comparing it to the libraries listed below

• mossmatters / HybPiper
  Recovering genes from targeted sequence capture data
  ☆126Updated 2 months ago
• LarsNauheimer / HybPhaser
  Workflow to detect and phase hybrids in target capture data
  ☆20Updated 2 years ago
• JosephCrispell / homoplasyFinder
  A tool to identify and annotate homoplasies on a phylogeny and sequence alignment
  ☆20Updated 4 years ago
• mossmatters / phyloscripts
  Helper scripts for processing and visualization of phylogenetics datasets
  ☆29Updated last year
• esayyari / DiscoVista
  ☆41Updated 2 years ago
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆47Updated 11 months ago
• ranwez / MACSE_V2_PIPELINES
  This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…
  ☆34Updated 2 years ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆62Updated 10 months ago
• xavierdidelot / BactDating
  Bayesian inference of ancestral dates on bacterial phylogenetic trees
  ☆91Updated last month
• fethalen / Patchwork
  Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data
  ☆36Updated last year
• rapidspeciation / biodiversity_genomics_course
  biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute
  ☆56Updated 2 months ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆30Updated 2 weeks ago
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆33Updated 4 years ago
• dportik / SuperCRUNCH
  A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…
  ☆41Updated last year
• edgardomortiz / fineRADstructure-tools
  Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)
  ☆10Updated 5 years ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆26Updated last week
• blackrim / treePL
  Phylogenetic penalized likelihood
  ☆51Updated 2 months ago
• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆22Updated 2 years ago
• FePhyFoFum / SortaDate
  ☆18Updated 4 years ago
• clwgg / nQuire
  A statistical framework for ploidy estimation using NGS short-read data
  ☆60Updated 7 years ago
• richardmleggett / MARTi
  Metagenomic Analysis in Real Time
  ☆24Updated last week
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆83Updated last year
• darwintreeoflife / darwintreeoflife.data
  Interim data for the Darwin Tree of Life Project
  ☆33Updated 5 years ago
• dereneaton / ipyrad
  Interactive assembly and analysis of RAD-seq data sets
  ☆77Updated 2 months ago
• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆81Updated 8 months ago
• BenoitMorel / GeneRax
  ☆72Updated 3 months ago
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆27Updated 6 years ago
• JLSteenwyk / PhyKIT
  a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
  ☆74Updated 3 weeks ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆43Updated 6 years ago
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆54Updated 2 years ago