Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
☆43Jul 14, 2026Updated last week
Alternatives and similar repositories for Captus
Users that are interested in Captus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Mar 18, 2025Updated last year
- Helper scripts for processing and visualization of phylogenetics datasets☆32Feb 19, 2024Updated 2 years ago
- Recovering genes from targeted sequence capture data☆135Jan 9, 2026Updated 6 months ago
- phylogenetics tools for linux (and other mostly posix compliant) computers☆126Apr 18, 2026Updated 3 months ago
- Reconstruct Ancestral State in Phylogenies☆30May 21, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- HybSeq Target Capture of 353 Protein Coding Genes in Any Angiosperm☆21Feb 5, 2023Updated 3 years ago
- PHYLOgenomic analysis pipeline for HERBarium specimens☆18Updated this week
- Workflow to detect and phase hybrids in target capture data☆20Mar 9, 2023Updated 3 years ago
- ☆19Dec 5, 2020Updated 5 years ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆24May 30, 2023Updated 3 years ago
- Machuruku☆32Jan 20, 2025Updated last year
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆17May 27, 2024Updated 2 years ago
- Removing PCR duplicates for sequencing reads.☆14Sep 8, 2020Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated last year
- Fast and accurate tool for estimating genomic distances between genome-skims☆47Sep 28, 2023Updated 2 years ago
- Parsers (rule-based) for information extraction of traits from plant treatments☆14Aug 15, 2025Updated 11 months ago
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆254Jun 25, 2026Updated 3 weeks ago
- Automated de novo assembly of whole chloroplast genomes.☆48Jul 5, 2026Updated 2 weeks ago
- ☆27Apr 14, 2021Updated 5 years ago
- Sketch phylogenetic trees and networks☆26Updated this week
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆20Updated this week
- package for interacting with the chromosome counts database (CCDB) at https://taux.evolseq.net/CCDB_web/☆13Jun 2, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A tool to extract and annotate genes from raw RNA-seq reads.☆10Dec 20, 2024Updated last year
- ☆38Apr 13, 2026Updated 3 months ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆390Feb 13, 2025Updated last year
- Phylogenetic penalized likelihood☆57Jun 27, 2025Updated last year
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Jun 10, 2026Updated last month
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 11 months ago
- A phylogenetic profile analysis tool☆38Jun 1, 2026Updated last month
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆43Jan 3, 2026Updated 6 months ago
- Get the consensus sequences from SAM (and BAM) files, ignoring the reference☆13Oct 27, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆10Oct 29, 2020Updated 5 years ago
- Phylogenetic ANalyses of DiversificAtion☆27Jul 2, 2026Updated 2 weeks ago
- SplitsTree App☆129Updated this week
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆114Updated this week
- Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences☆11Sep 3, 2025Updated 10 months ago
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆42Apr 17, 2026Updated 3 months ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆198Feb 4, 2024Updated 2 years ago