Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
☆39Mar 19, 2026Updated last week
Alternatives and similar repositories for Captus
Users that are interested in Captus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Mar 18, 2025Updated last year
- Helper scripts for processing and visualization of phylogenetics datasets☆31Feb 19, 2024Updated 2 years ago
- Reconstruct Ancestral State in Phylogenies☆27May 21, 2024Updated last year
- phylogenetics tools for linux (and other mostly posix compliant) computers☆123Jan 17, 2025Updated last year
- Recovering genes from targeted sequence capture data☆133Jan 9, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- HybSeq Target Capture of 353 Protein Coding Genes in Any Angiosperm☆21Feb 5, 2023Updated 3 years ago
- PHYLOgenomic analysis pipeline for HERBarium specimens☆17Feb 9, 2026Updated last month
- Workflow to detect and phase hybrids in target capture data☆20Mar 9, 2023Updated 3 years ago
- ☆18Dec 5, 2020Updated 5 years ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆24May 30, 2023Updated 2 years ago
- Machuruku☆32Jan 20, 2025Updated last year
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 5 years ago
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆16May 27, 2024Updated last year
- Removing PCR duplicates for sequencing reads.☆14Sep 8, 2020Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated 10 months ago
- Parsers (rule-based) for information extraction of traits from plant treatments☆14Aug 15, 2025Updated 7 months ago
- Automated de novo assembly of whole chloroplast genomes.☆48Sep 23, 2024Updated last year
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆229Jan 4, 2026Updated 2 months ago
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆18Feb 19, 2026Updated last month
- Fast and accurate tool for estimating genomic distances between genome-skims☆47Sep 28, 2023Updated 2 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆37Jan 3, 2026Updated 2 months ago
- ☆26Apr 14, 2021Updated 4 years ago
- package for interacting with the chromosome counts database (CCDB) at https://taux.evolseq.net/CCDB_web/☆13Jul 28, 2025Updated 7 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A tool to extract and annotate genes from raw RNA-seq reads.☆10Dec 20, 2024Updated last year
- ☆38Apr 8, 2022Updated 3 years ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆373Feb 13, 2025Updated last year
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Updated this week
- A phylogenetic profile analysis tool☆38Mar 11, 2026Updated 2 weeks ago
- Phylogenetic penalized likelihood☆54Jun 27, 2025Updated 8 months ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 7 months ago
- Phylogenetic ANalyses of DiversificAtion☆27Jan 27, 2026Updated last month
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Oct 29, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Get the consensus sequences from SAM (and BAM) files, ignoring the reference☆13Oct 27, 2019Updated 6 years ago
- SplitsTree App☆124Mar 15, 2026Updated last week
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆112Updated this week
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆38Mar 19, 2026Updated last week
- Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences☆11Sep 3, 2025Updated 6 months ago
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆25Mar 20, 2026Updated last week
- Scripts in R for Landscape Genomics Analyses v.2☆10Feb 17, 2023Updated 3 years ago