kieranrcampbell / embeddr
This repository is retired software
☆12Updated 9 years ago
Alternatives and similar repositories for embeddr:
Users that are interested in embeddr are comparing it to the libraries listed below
- ☆19Updated 7 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 5 years ago
- Generate cellular maps of differentiation manifolds with complex topologies.☆26Updated 6 years ago
- post-clustering differential expression test☆35Updated 5 years ago
- ☆16Updated 6 years ago
- Code and manuscript files for Aaron and Karsten's deconvolution paper.☆16Updated 6 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆28Updated 5 years ago
- easy access to benchmark datasets☆50Updated 6 years ago
- ☆20Updated last year
- Multi-study integration of cellular trajectories☆18Updated 4 years ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Updated 5 years ago
- Dimensionality reduction for single cell RNA-seq data☆35Updated 5 years ago
- Tutorial for the analysis of scRNA-seq data in R☆18Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 8 months ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- scRNAseq integration with triplet neural networks☆40Updated 2 years ago
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 4 years ago
- Single Cell multimodal data scripts for downloading datasets☆17Updated 3 months ago
- R package for transfer learning of single-cell RNA-seq denoising☆29Updated 2 years ago
- kallisto index tag extractor☆20Updated 5 years ago
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆14Updated 5 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆26Updated 3 years ago
- ☆26Updated last year
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Updated 5 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆21Updated last month
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 5 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆21Updated 3 years ago