This repository is retired software
☆14Oct 29, 2015Updated 10 years ago
Alternatives and similar repositories for embeddr
Users that are interested in embeddr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆12Mar 21, 2019Updated 7 years ago
- Faster manipulation of dendrogram objects in R.☆15May 22, 2015Updated 10 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- MAW: a suite on the computation and application of Minimal Absent Words☆16Nov 1, 2021Updated 4 years ago
- Inference of switch-like differential expression along single-cell trajectories☆22Oct 24, 2017Updated 8 years ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 6 years ago
- Zero-inflated mixture model for single-cell data.☆14Feb 16, 2016Updated 10 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated last year
- Code to support: "pcaReduce: hierarchical clustering of single cell transcriptional profiles"☆20Feb 24, 2024Updated 2 years ago
- under construction☆14Apr 20, 2017Updated 8 years ago
- Genevieve client: using GenNotes, report ClinVar for individual genomes & add consensus notes☆10Aug 2, 2016Updated 9 years ago
- ☆14May 26, 2020Updated 5 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Mar 3, 2017Updated 9 years ago
- ☆32Mar 4, 2024Updated 2 years ago
- BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…☆12May 9, 2013Updated 12 years ago
- Generate cellular maps of differentiation manifolds with complex topologies.☆27Jun 26, 2018Updated 7 years ago
- Run-length compressed BWT with LZ77 sampled suffix array☆10Apr 25, 2022Updated 3 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Nov 2, 2018Updated 7 years ago
- ☆12Jul 30, 2022Updated 3 years ago
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques☆16Jun 1, 2021Updated 4 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Dec 20, 2018Updated 7 years ago
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆87Sep 17, 2025Updated 6 months ago
- lightning☆11Oct 20, 2015Updated 10 years ago
- PCA in rust☆16Jul 30, 2023Updated 2 years ago
- Small hack to draw date histogram facets as graph using nvd3.js☆54Nov 21, 2012Updated 13 years ago
- Finding all the circuits of a directed graph with self-arcs and multiple-arcs by K.A. Hawick and H.A. James☆19Apr 11, 2013Updated 12 years ago
- GenNotes – public consensus annotation of genetic variants☆11Mar 27, 2016Updated 9 years ago
- ☆12Feb 7, 2017Updated 9 years ago
- ☆11Sep 5, 2018Updated 7 years ago
- ☆45Jul 7, 2016Updated 9 years ago
- Chromatin domains bursting with flavor☆12Dec 29, 2019Updated 6 years ago
- R package to model time series accounting for noise in the temporal dimension. Specifically designed for single cell transcriptome experi…☆15Sep 24, 2021Updated 4 years ago
- Simple and fast MinHash implementation in C with Python wrapper☆13Jul 24, 2025Updated 8 months ago
- We have moved to https://github.com/limix/limix.☆23Aug 29, 2017Updated 8 years ago
- http://mozillascience.github.io/codeReview/intro.html☆29Mar 30, 2020Updated 5 years ago
- Zero-inflated dimensionality reduction algorithm for single-cell data☆111Jun 2, 2020Updated 5 years ago
- try dat using docker☆30Mar 14, 2018Updated 8 years ago
- cyclone☆19Jul 21, 2015Updated 10 years ago
- SV detection from paired end reads mapping☆38Jul 19, 2010Updated 15 years ago