R data package for annotating/converting Gene IDs
☆169Jul 6, 2025Updated 10 months ago
Alternatives and similar repositories for annotables
Users that are interested in annotables are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated last year
- A tool for Read Multi-Mapper Resolution☆24Feb 15, 2017Updated 9 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆33Jun 3, 2022Updated 3 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆41Jun 6, 2019Updated 6 years ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆166Oct 2, 2025Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Apr 22, 2019Updated 7 years ago
- Fast Gene Set Enrichment Analysis☆441Jan 2, 2026Updated 4 months ago
- An r package for generating beautiful and customizable heatmaps☆239Sep 7, 2020Updated 5 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆133Oct 14, 2025Updated 7 months ago
- Transcript quantification import for modular pipelines☆145Apr 15, 2026Updated last month
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆172Jan 28, 2026Updated 3 months ago
- zero-inflated negative binomial gene expression in R☆20Jan 31, 2018Updated 8 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Jan 4, 2023Updated 3 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆29May 15, 2024Updated 2 years ago
- Tidy Verbs for Dealing with Genomic Data Frames https://const-ae.github.io/tidygenomics/☆104Jan 12, 2026Updated 4 months ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Nov 22, 2017Updated 8 years ago
- This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.☆246Nov 28, 2022Updated 3 years ago
- A tool to find sequencing data and metadata from public databases.☆598Aug 13, 2024Updated last year
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆23Sep 7, 2019Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Apr 7, 2022Updated 4 years ago
- Transcript quantification import with automatic metadata detection☆72May 4, 2026Updated 2 weeks ago
- Sashimi plots for RNA-seq data using detected transcripts☆33May 1, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- exprAnalysis☆15Dec 19, 2016Updated 9 years ago
- Analyzing RNA-Seq with approximate likelihood☆26Dec 13, 2020Updated 5 years ago
- BigWig and BAM utilities☆103Mar 26, 2024Updated 2 years ago
- python stuff I use☆20Feb 16, 2026Updated 3 months ago
- Probabilistic gene expression barcodes for cell type annotation☆27Apr 26, 2022Updated 4 years ago
- Tidy up computational biology objects☆50Feb 1, 2019Updated 7 years ago
- Repository for signature genes from Immune Cell Atlas☆20Sep 25, 2019Updated 6 years ago
- Create anatograms using ggplot2☆403Aug 7, 2025Updated 9 months ago
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Targeted and non-targeted anticancer drugs and drug regimens☆30Mar 23, 2026Updated 2 months ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Nov 5, 2022Updated 3 years ago
- LEGACY: Git commands to keep a Git repository and Bioconductor SVN in sync☆10Oct 17, 2016Updated 9 years ago
- An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..☆829Aug 4, 2024Updated last year
- Locus Overlap Analysis: Enrichment of Genomic Ranges☆80Sep 1, 2020Updated 5 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13May 2, 2019Updated 7 years ago
- genes and genomes at your fingertips☆412Mar 5, 2026Updated 2 months ago