R data package for annotating/converting Gene IDs
☆169Jul 6, 2025Updated 8 months ago
Alternatives and similar repositories for annotables
Users that are interested in annotables are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated last year
- A tool for Read Multi-Mapper Resolution☆24Feb 15, 2017Updated 9 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆33Jun 3, 2022Updated 3 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Jun 6, 2019Updated 6 years ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆167Oct 2, 2025Updated 5 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Apr 22, 2019Updated 6 years ago
- Fast Gene Set Enrichment Analysis☆435Jan 2, 2026Updated 2 months ago
- An r package for generating beautiful and customizable heatmaps☆238Sep 7, 2020Updated 5 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆132Oct 14, 2025Updated 5 months ago
- Transcript quantification import for modular pipelines☆142Sep 30, 2025Updated 5 months ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆173Jan 28, 2026Updated last month
- zero-inflated negative binomial gene expression in R☆20Jan 31, 2018Updated 8 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Jan 4, 2023Updated 3 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28May 15, 2024Updated last year
- Tidy Verbs for Dealing with Genomic Data Frames https://const-ae.github.io/tidygenomics/☆104Jan 12, 2026Updated 2 months ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Nov 22, 2017Updated 8 years ago
- This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.☆246Nov 28, 2022Updated 3 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆31Updated this week
- A tool to find sequencing data and metadata from public databases.☆597Aug 13, 2024Updated last year
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Sep 7, 2019Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Apr 7, 2022Updated 3 years ago
- Transcript quantification import with automatic metadata detection☆70Mar 3, 2026Updated 2 weeks ago
- exprAnalysis☆15Dec 19, 2016Updated 9 years ago
- Analyzing RNA-Seq with approximate likelihood☆26Dec 13, 2020Updated 5 years ago
- BigWig and BAM utilities☆103Mar 26, 2024Updated last year
- python stuff I use☆20Feb 16, 2026Updated last month
- Probabilistic gene expression barcodes for cell type annotation☆26Apr 26, 2022Updated 3 years ago
- Tidy up computational biology objects☆50Feb 1, 2019Updated 7 years ago
- Repository for signature genes from Immune Cell Atlas☆19Sep 25, 2019Updated 6 years ago
- Create anatograms using ggplot2☆403Aug 7, 2025Updated 7 months ago
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 5 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13May 2, 2019Updated 6 years ago
- Targeted and non-targeted anticancer drugs and drug regimens☆30Updated this week
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Nov 5, 2022Updated 3 years ago
- LEGACY: Git commands to keep a Git repository and Bioconductor SVN in sync☆10Oct 17, 2016Updated 9 years ago
- An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..☆821Aug 4, 2024Updated last year
- Locus Overlap Analysis: Enrichment of Genomic Ranges☆79Sep 1, 2020Updated 5 years ago
- genes and genomes at your fingertips☆410Mar 5, 2026Updated 2 weeks ago