Alternatives and similar repositories for annotables

Users that are interested in annotables are comparing it to the libraries listed below

• jokergoo / EnrichedHeatmap
  make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
  ☆196Updated last year
• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆121Updated 5 years ago
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆165Updated this week
• Olink-Proteomics / OlinkRPackage
  Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users…
  ☆119Updated last week
• bvieth / powsimR
  Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…
  ☆107Updated 2 years ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆92Updated 8 months ago
• ShixiangWang / sigminer
  🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…
  ☆154Updated last month
• Bioconductor / Contributions
  Contribute Packages to Bioconductor
  ☆142Updated 5 months ago
• Bioconductor / CSAMA
  Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology
  ☆94Updated last year
• jokergoo / InteractiveComplexHeatmap
  Make Interactive Complex Heatmaps
  ☆138Updated last year
• chrisamiller / fishplot
  Create timecourse "fish plots" that show changes in the clonal architecture of tumors
  ☆170Updated 2 years ago
• hms-dbmi / scde
  R package for analyzing single-cell RNA-seq data
  ☆176Updated last year
• Hoohm / dropSeqPipe
  A SingleCell RNASeq pre-processing snakemake workflow
  ☆148Updated 2 years ago
• alanocallaghan / scater
  Clone of the Bioconductor repository for the scater package.
  ☆97Updated 7 months ago
• hbctraining / DGE_workshop_salmon
  ☆72Updated 3 years ago
• stemangiola / tidybulk
  Brings bulk and pseudobulk transcriptomics to the tidyverse
  ☆172Updated this week
• iDEP-SDSU / idep
  Integrated Differential Expression and Pathway analysis
  ☆132Updated 3 weeks ago
• davismcc / archive-scater
  An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.
  ☆64Updated 8 years ago
• vals / umis
  Tools for processing UMI RNA-tag data
  ☆131Updated 2 years ago
• thelovelab / tximport
  Transcript quantification import for modular pipelines
  ☆141Updated last week
• PoisonAlien / TCGAmutations
  R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
  ☆97Updated last year
• omarwagih / ggseqlogo
  Publication-quality sequence logos in R
  ☆221Updated 11 months ago
• jdblischak / singleCellSeq
  Batch effects and the effective design of single-cell gene expression studies
  ☆104Updated 6 years ago
• RamRS / biostar-mod-templates
  Moderator Templates for https://www.biostars.org/
  ☆11Updated 4 years ago
• seandavi / GEOquery
  The bridge between the NCBI Gene Expression Omnibus and Bioconductor
  ☆100Updated last month
• mskcc / RNAseqDB
  ☆142Updated 7 years ago
• igordot / msigdbr
  MSigDB gene sets for multiple organisms in a tidy data format
  ☆82Updated 2 months ago
• tavareshugo / tutorial_DESeq2_contrasts
  ☆63Updated last year
• dzhang32 / ggtranscript
  Visualizing transcript structure and annotation using ggplot2
  ☆160Updated last year
• mikelove / bioc-refcard
  Bioconductor cheat sheet
  ☆190Updated last year