stephenturner / annotables

Related projects: ⓘ

• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆116Updated 4 years ago
• bvieth / powsimR
  Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…
  ☆104Updated last year
• jokergoo / EnrichedHeatmap
  make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
  ☆186Updated 6 months ago
• Olink-Proteomics / OlinkRPackage
  Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users…
  ☆87Updated this week
• stemangiola / tidybulk
  Brings bulk and pseudobulk transcriptomics to the tidyverse
  ☆164Updated last month
• hbctraining / DGE_workshop_salmon
  ☆67Updated 2 years ago
• Bioconductor / CSAMA
  Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology
  ☆92Updated 2 months ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆76Updated 5 months ago
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆158Updated last month
• PoisonAlien / trackplot
  Generate IGV style locus tracks from bigWig files in R
  ☆130Updated 5 months ago
• omarwagih / ggseqlogo
  Publication-quality sequence logos in R
  ☆202Updated 7 months ago
• Bioconductor / Contributions
  Contribute Packages to Bioconductor
  ☆134Updated last year
• OSCA-source / OSCA
  The package wrapping the book, for deployment via the Bioconductor build system.
  ☆76Updated last year
• igordot / msigdbr
  MSigDB gene sets for multiple organisms in a tidy data format
  ☆69Updated last year
• tavareshugo / tutorial_DESeq2_contrasts
  ☆54Updated 4 months ago
• csbl-usp / CEMiTool
  Co-Expression Module Identification Tool (CEMiTool) official repository
  ☆22Updated 6 months ago
• PoisonAlien / TCGAmutations
  R data package for pre-compiled somatic mutations from TCGA cohorts (from Broad Firehose and TCGA MC3 Project)
  ☆83Updated 7 months ago
• chrisamiller / fishplot
  Create timecourse "fish plots" that show changes in the clonal architecture of tumors
  ☆162Updated last year
• quinlan-lab / sllobs-biostats
  ☆70Updated 2 years ago
• Hoohm / dropSeqPipe
  A SingleCell RNASeq pre-processing snakemake workflow
  ☆147Updated last year
• iDEP-SDSU / idep
  Integrated Differential Expression and Pathway analysis
  ☆122Updated this week
• PMBio / peer
  A factor analysis package
  ☆90Updated 12 years ago
• GSEA-MSigDB / GSEA_R
  Updated implementation of the GSEA-P R application for modern R distributions
  ☆92Updated 2 years ago
• tidyomics / tidyomics
  Easily install and load packages from the tidyomcis ecosystem
  ☆60Updated 6 months ago
• hbctraining / Accessing_public_genomic_data
  Tutorials on accessing public reference and genomic data
  ☆29Updated 2 years ago
• jokergoo / InteractiveComplexHeatmap
  Make Interactive Complex Heatmaps
  ☆126Updated 6 months ago
• davismcc / archive-scater
  An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.
  ☆64Updated 7 years ago
• dzhang32 / ggtranscript
  Visualizing transcript structure and annotation using ggplot2
  ☆130Updated 3 weeks ago
• alanocallaghan / scater
  Clone of the Bioconductor repository for the scater package.
  ☆94Updated 2 months ago
• BCCHR-trainee-omics-group / StudyGroup
  This is where TOG houses all of its workshop scripts, as well as details on its upcoming workshops and seminars.
  ☆41Updated 3 months ago