Unix-based RNA-seq quantification pipeline
☆10Nov 18, 2015Updated 10 years ago
Alternatives and similar repositories for EQP-cluster
Users that are interested in EQP-cluster are comparing it to the libraries listed below
Sorting:
- Rapid and robust analysis of RNA-Seq experiments.☆32Apr 16, 2016Updated 9 years ago
- Tools for munging genomic data☆21Jul 9, 2019Updated 6 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Sep 7, 2019Updated 6 years ago
- Gene Expression Atlas☆21Dec 16, 2022Updated 3 years ago
- Railroadtracks is a Python package to handle connected computation steps for DNA and RNA Seq.☆14Jun 22, 2015Updated 10 years ago
- Material for introductory course on using Blender for 3D printing☆11Jun 22, 2016Updated 9 years ago
- FRAMA: From RNA-seq data to annotated mRNA assemblies☆12Sep 28, 2018Updated 7 years ago
- The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.☆25Apr 15, 2021Updated 4 years ago
- CiteFuse:☆28Feb 7, 2023Updated 3 years ago
- This bartender version could handle arbitrary length of barcode☆32Jan 6, 2024Updated 2 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated last year
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated last year
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Dec 7, 2017Updated 8 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Apr 2, 2023Updated 2 years ago
- Creating virtual environments for R.☆17Oct 24, 2019Updated 6 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆39Nov 14, 2022Updated 3 years ago
- Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…☆69Dec 14, 2022Updated 3 years ago
- R interface to Tensorflow via skflow☆18May 13, 2016Updated 9 years ago
- A fast python class for reading 2-bit files (used by UCSC genome browser)☆14Oct 10, 2025Updated 4 months ago
- A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted nex…☆56Feb 13, 2026Updated 2 weeks ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Jun 6, 2019Updated 6 years ago
- Enriched Domain Detector for ChIP-seq data☆16Aug 17, 2022Updated 3 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- Aligner for sequencing data☆18Feb 13, 2018Updated 8 years ago
- Code to reproduce analyses from the sleuth paper☆16Nov 20, 2018Updated 7 years ago
- A command line tool that uses a Boolean calculus of calendars for computing availability (currently supports Google Calendar API)☆25Nov 3, 2021Updated 4 years ago
- BAGEL software☆28Jan 30, 2024Updated 2 years ago
- Yet Another Motif Discovery Algorithm☆53Jan 10, 2019Updated 7 years ago
- Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.☆30Feb 3, 2026Updated last month
- MUltiScale enrIchment Calling for ChIP-Seq Datasets☆23Mar 14, 2019Updated 6 years ago
- Efficient handling of FASTQ files from Python☆51Nov 28, 2025Updated 3 months ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Aug 20, 2018Updated 7 years ago
- High throughput, pain-free big data pipelines.☆30Mar 11, 2017Updated 8 years ago
- ☆26Oct 15, 2020Updated 5 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Feb 4, 2016Updated 10 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Aug 19, 2017Updated 8 years ago
- Suite of tools for processing BRB-seq data☆30Jan 19, 2026Updated last month
- Chemical Similarity Enrichment analysis of metabolomics datasets☆30Jul 19, 2024Updated last year