Novartis / EQP-clusterLinks
Unix-based RNA-seq quantification pipeline
☆10Updated 9 years ago
Alternatives and similar repositories for EQP-cluster
Users that are interested in EQP-cluster are comparing it to the libraries listed below
Sorting:
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- fast webservices based query tool for large sets of genomic features☆25Updated 3 months ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Updated 3 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 6 years ago
- ☆28Updated 6 years ago
- Machine learning use cases for teaching☆13Updated 8 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Allele frequency filter app☆14Updated 3 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 8 months ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year
- Library for indexing VCF files for random access searches by rsID☆17Updated last month
- ☆25Updated 4 years ago
- FRAMA: From RNA-seq data to annotated mRNA assemblies☆12Updated 6 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Updated 9 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Updated 2 months ago
- A web based tool to manage and automate the processing of publicly available datasets.☆40Updated 4 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 3 years ago
- Examples of kallisto + sleuth☆11Updated 8 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago