nellore / railLinks
Scalable RNA-seq analysis
☆73Updated 4 years ago
Alternatives and similar repositories for rail
Users that are interested in rail are comparing it to the libraries listed below
Sorting:
- conda recipes for genomic data☆85Updated 4 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- A web based tool to manage and automate the processing of publicly available datasets.☆40Updated 4 years ago
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆126Updated 3 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 3 months ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 7 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆58Updated 7 years ago
- Fast fusion detection using kallisto☆80Updated 2 months ago
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-t…☆22Updated 5 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Updated 7 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated 2 years ago
- Response to blog post about Salmon☆37Updated 7 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- OLD REPOSITORY - Go to☆31Updated 7 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆51Updated 8 months ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Companion repo for ExAC paper, 2015☆33Updated 8 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- A versatile and efficient RNA-Seq read counting tool☆16Updated 9 years ago
- ☆35Updated 9 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago