Alternatives and similar repositories for rail:

Users that are interested in rail are comparing it to the libraries listed below

• nellore / intropolis
  Exon-exon splice junctions across SRA
  ☆40Updated 3 years ago
• DaehwanKimLab / hisat
  Fast spliced aligner with low memory requirements
  ☆41Updated 9 years ago
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆88Updated 5 years ago
• ChristopherWilks / snaptron
  fast webservices based query tool for large sets of genomic features
  ☆25Updated this week
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago
• Cibiv / Teaser
  A tool to benchmark mappers and different parameters within minutes
  ☆43Updated 5 years ago
• macarthur-lab / igv_utils
  utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.
  ☆48Updated 5 years ago
• slowkow / picardmetrics
  Run Picard on BAM files and collate 90 metrics into one file.
  ☆39Updated 7 years ago
• Clinical-Genomics / chanjo
  Chanjo provides a better way to analyze coverage data in clinical sequencing.
  ☆50Updated 3 months ago
• Ettwiller / Damage-estimator
  Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…
  ☆52Updated 7 years ago
• IARCbioinfo / needlestack
  Multi-sample somatic variant caller
  ☆50Updated 3 years ago
• brwnj / umitools
  Tools to handle reads sequenced with unique molecular identifiers (UMIs).
  ☆30Updated 7 years ago
• arq5x / bedtools-protocols
  ☆78Updated 11 years ago
• lh3 / bfc
  High-performance error correction for Illumina resequencing data
  ☆69Updated 8 years ago
• schatzlab / appliedgenomics2017
  JHU EN.600.649: Computational Genomics: Applied Comparative Genomics
  ☆57Updated 7 years ago
• bow / crimson
  Bioinformatics tool outputs converter to JSON or YAML
  ☆36Updated 4 months ago
• cc2qe / vawk
  An awk-like VCF parser
  ☆56Updated last year
• ewels / Labrador
  A web based tool to manage and automate the processing of publicly available datasets.
  ☆40Updated 4 years ago
• juliangehring / SomaticSignatures
  The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-t…
  ☆22Updated 4 years ago
• CGGOxford / Opossum
  Opossum is a tool to pre-process RNA-seq reads prior to variant calling.
  ☆28Updated 6 years ago
• bgruening / galaxy-rna-workbench
  Galaxy RNA workbench
  ☆39Updated 4 years ago
• boutroslab / cld
  A software for the multispecies design of CRISPR/Cas9 libraries
  ☆34Updated 2 years ago
• Oshlack / STRetch
  Method for detecting STR expansions from short-read sequencing data
  ☆62Updated 3 years ago
• aryeelab / umi
  Preprocessing tools for unique molecular index (UMI) sequencing reads
  ☆31Updated last year
• cancerit / cgpBattenberg
  Battenberg algorithm and associated implementation script
  ☆52Updated 4 years ago
• rgcgithub / clamms
  CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.
  ☆29Updated 4 years ago
• Oshlack / Clinker
  Gene Fusion Visualiser
  ☆51Updated 2 years ago
• grenaud / deML
  Maximum likelihood demultiplexing
  ☆46Updated last month
• aboyle / F-seq
  A Feature Density Estimator for High-Throughput Sequence Tags
  ☆23Updated 3 years ago
• ding-lab / GenomeVIP
  ☆20Updated 8 years ago