nellore / rail
Scalable RNA-seq analysis
☆73Updated 4 years ago
Alternatives and similar repositories for rail:
Users that are interested in rail are comparing it to the libraries listed below
- Exon-exon splice junctions across SRA☆40Updated 3 years ago
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated this week
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- A tool to benchmark mappers and different parameters within minutes☆43Updated 5 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆39Updated 7 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 3 months ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆52Updated 7 years ago
- Multi-sample somatic variant caller☆50Updated 3 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- ☆78Updated 11 years ago
- High-performance error correction for Illumina resequencing data☆69Updated 8 years ago
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆57Updated 7 years ago
- Bioinformatics tool outputs converter to JSON or YAML☆36Updated 4 months ago
- An awk-like VCF parser☆56Updated last year
- A web based tool to manage and automate the processing of publicly available datasets.☆40Updated 4 years ago
- The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-t…☆22Updated 4 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Galaxy RNA workbench☆39Updated 4 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆34Updated 2 years ago
- Method for detecting STR expansions from short-read sequencing data☆62Updated 3 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Battenberg algorithm and associated implementation script☆52Updated 4 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Maximum likelihood demultiplexing☆46Updated last month
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 3 years ago
- ☆20Updated 8 years ago