COMBINE-lab / RapMap
Rapid sensitive and accurate read mapping via quasi-mapping
☆89Updated 4 years ago
Alternatives and similar repositories for RapMap:
Users that are interested in RapMap are comparing it to the libraries listed below
- ☆78Updated 11 years ago
- An awk-like VCF parser☆56Updated last year
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆82Updated 6 months ago
- ☆94Updated 2 years ago
- ABRA2☆92Updated 2 years ago
- Relevant papers for CNV and SV approaches☆94Updated 5 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆140Updated last week
- Filtering and profiling of next-generational sequencing data using region-specific rules☆77Updated last year
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- An efficient FASTQ manipulation suite☆137Updated 5 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 7 years ago
- High-performance error correction for Illumina resequencing data☆70Updated 8 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆105Updated 4 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago
- BAM Statistics, Feature Counting and Annotation☆149Updated 2 months ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆90Updated 3 years ago
- BigWig and BAM utilities☆96Updated last year
- FEELnc : FlExible Extraction of LncRNA☆87Updated 7 months ago
- ☆120Updated 5 months ago
- Create Bloom filters for a given reference and then use it to categorize sequences☆76Updated 4 months ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- Read visualizer for structural variants☆82Updated 6 years ago
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆49Updated 12 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆126Updated last year
- A read extraction and realignment tool for next generation sequencing data☆99Updated 2 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆97Updated 2 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last month