COMBINE-lab / RapMap
Rapid sensitive and accurate read mapping via quasi-mapping
☆89Updated 4 years ago
Alternatives and similar repositories for RapMap:
Users that are interested in RapMap are comparing it to the libraries listed below
- ☆78Updated 10 years ago
- ☆94Updated 2 years ago
- An awk-like VCF parser☆56Updated last year
- don't get DUP'ed or DEL'ed by your putative SVs.☆104Updated 4 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆137Updated 8 months ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆89Updated 3 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 3 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆111Updated 2 months ago
- ABRA2☆92Updated 2 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆70Updated 3 years ago
- BAM Statistics, Feature Counting and Annotation☆146Updated this week
- High-performance error correction for Illumina resequencing data☆69Updated 8 years ago
- Relevant papers for CNV and SV approaches☆94Updated 3 months ago
- NEAT read simulation tools☆97Updated 2 years ago
- phasing and Allele Specific Expression from RNA-seq☆111Updated 7 months ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆81Updated 4 months ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆101Updated 4 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆126Updated last year
- Bayesian genotyper for structural variants☆127Updated 3 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆75Updated last year
- ☆89Updated 3 years ago
- SV caller for nanopore data☆91Updated 4 years ago
- ☆119Updated 3 months ago
- A tool to benchmark mappers and different parameters within minutes☆43Updated 5 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆138Updated 6 months ago
- STITCH - Sequencing To Imputation Through Constructing Haplotypes☆79Updated this week
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆106Updated 2 years ago
- A C library for handling bigWig files☆75Updated last month
- R package designed to simplify structural variant analysis☆72Updated 3 years ago