your-highness / normR
Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.
☆11Updated 3 years ago
Alternatives and similar repositories for normR:
Users that are interested in normR are comparing it to the libraries listed below
- R package to quickly obtain count vectors from indexed bam files☆14Updated 3 years ago
- Color DNA/RNA bases in terminal output☆20Updated 7 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Updated 8 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 7 months ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Updated 7 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Updated 6 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 5 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 8 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 5 years ago
- reference free variant assembly☆32Updated last year
- stageR package☆11Updated last year
- Chromatin segmentation in R☆19Updated 6 years ago
- Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set☆16Updated 5 years ago
- What's The Function of these genes?☆22Updated 7 years ago
- ☆12Updated 7 years ago
- Shape analysis of high-throughput data☆19Updated 8 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆14Updated 10 years ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Updated 7 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated last month
- ☆37Updated 4 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Updated 2 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- ☆22Updated last month
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Updated 9 years ago