your-highness / normRLinks
Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.
☆11Updated 3 years ago
Alternatives and similar repositories for normR
Users that are interested in normR are comparing it to the libraries listed below
Sorting:
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Updated last month
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Color DNA/RNA bases in terminal output☆21Updated 7 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Updated 9 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Updated 7 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 7 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Updated 9 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Updated 7 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- ☆22Updated 8 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- ☆12Updated 2 months ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11Updated 8 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Updated 6 years ago
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆14Updated 2 years ago
- Unix-based RNA-seq quantification pipeline☆10Updated 9 years ago
- ☆13Updated 9 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Updated 5 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 5 years ago
- integrative pathway analysis with modern PCA methodology and gene selection☆11Updated 2 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 6 years ago