Trigger the Google Genomics Pipeline API with CWL
☆11Feb 7, 2017Updated 9 years ago
Alternatives and similar repositories for funnel-client
Users that are interested in funnel-client are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Convert CWL to WDL☆17Oct 17, 2016Updated 9 years ago
- [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0☆75Nov 18, 2020Updated 5 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Sep 12, 2018Updated 7 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 6 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Nov 17, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Request for comments on interchangeable bioinformatics containers☆39Jun 18, 2019Updated 6 years ago
- Deprecated☆101Aug 12, 2019Updated 6 years ago
- ☆11Jun 23, 2017Updated 8 years ago
- Java SDK for the Common Workflow Language standards☆15Apr 29, 2026Updated 3 weeks ago
- APIs for discovering genomics tools, their metadata and their containers☆35Mar 28, 2026Updated last month
- ☆11Oct 21, 2016Updated 9 years ago
- Dockerflow is a workflow runner that uses Dataflow to run a series of tasks in Docker with the Pipelines API☆103Nov 21, 2017Updated 8 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 10 years ago
- Docker images of bioinformatics software☆21Jun 15, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Registration of Galaxy Tools in Elixir☆12Jan 7, 2019Updated 7 years ago
- Curated collection of open-source bioinformatics tools☆28Feb 5, 2019Updated 7 years ago
- Open-source opinionated Galaxy-based framework for microbiota analysis☆13Jan 21, 2021Updated 5 years ago
- Dockerfiles to build Biopython instances☆28Aug 30, 2016Updated 9 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Aug 9, 2018Updated 7 years ago
- Defunct. Use https://github.com/Linuxbrew/docker☆14Jun 24, 2016Updated 9 years ago
- An external library for delivering Slurm Elastic Computing.☆12Mar 31, 2017Updated 9 years ago
- ☆21Jul 3, 2019Updated 6 years ago
- A fast, parallel, streaming multipart uploader for S3☆14Mar 23, 2017Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Jul 7, 2017Updated 8 years ago
- Collection of scripts for working with Wiggle files and analyzing sequencing data☆17Feb 9, 2019Updated 7 years ago
- Rawls service for DSDE☆27May 7, 2026Updated 2 weeks ago
- Generating tool descriptors from bio.tools☆10Jun 13, 2018Updated 7 years ago
- Examples for the Google Genomics Pipelines API.☆50Dec 15, 2017Updated 8 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- FireCloud user interface for web browsers.☆20Aug 22, 2025Updated 9 months ago
- Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement☆29Jun 9, 2020Updated 5 years ago
- CWL experimental grammar☆11Nov 16, 2025Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The WES API is a standard way to run and manage portable workflows.☆91Feb 20, 2026Updated 3 months ago
- Parallel Block GZIP☆50Aug 4, 2016Updated 9 years ago
- ☆12Dec 8, 2021Updated 4 years ago
- robust matching of small variant datasets using flexible scoring schemes☆12Mar 26, 2020Updated 6 years ago
- Image and VM management for Jenkins, Spark and Mesos clusters in EC2☆22Jul 24, 2020Updated 5 years ago
- A collection of well-known bioinformatics programs.☆25Apr 24, 2015Updated 11 years ago
- Deprecated, see https://labsyspharm.github.io/rnaseq/☆12Feb 28, 2019Updated 7 years ago