bmeg / funnel-client
Trigger the Google Genomics Pipeline API with CWL
☆11Updated 8 years ago
Alternatives and similar repositories for funnel-client:
Users that are interested in funnel-client are comparing it to the libraries listed below
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Updated 5 years ago
- Galaxy Github repository BETA 1. May be destroyed and recreated if post-conversion problems are found (but post-conversion commits on thi…☆12Updated 10 years ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 4 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Updated 9 years ago
- ☆12Updated 8 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 3 months ago
- A fast tool to convert BioJS components into Galaxy visualization plugins.☆14Updated 4 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- Convert CWL to WDL☆17Updated 8 years ago
- GenoTypes Compressor☆15Updated 2 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- Docker images of bioinformatics software☆21Updated 7 years ago
- Finding a scalable alternative to the VCF File for genomics analysis☆14Updated 8 years ago
- ☆13Updated 7 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Updated 7 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 6 years ago
- vcf file manipulation☆21Updated 9 years ago
- Request for comments on interchangeable bioinformatics containers☆40Updated 5 years ago
- ☆11Updated 8 years ago
- An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data☆14Updated 6 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- Allele frequency filter app☆14Updated 2 years ago
- CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens☆19Updated 5 years ago
- probability of mendelian error in trios.☆11Updated 9 years ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Updated 7 years ago