Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.
☆83Dec 10, 2020Updated 5 years ago
Alternatives and similar repositories for continuous_analysis
Users that are interested in continuous_analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Denoising Autoencoders for Phenotype Stratification☆42Nov 9, 2018Updated 7 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated 2 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Apr 16, 2016Updated 10 years ago
- Javascript library for visualizing genomics data with D3.☆19Jan 6, 2017Updated 9 years ago
- home of the bear's lair☆10May 19, 2017Updated 9 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Materials for GCB535 at Penn.☆21Apr 19, 2019Updated 7 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Aug 7, 2018Updated 8 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆53Nov 5, 2022Updated 3 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated 2 years ago
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- Provides access to complex Bioinformatics software (even BioLinux!) in just one command.☆75Jun 28, 2017Updated 9 years ago
- A place to collect papers that are related to deep learning and computational biology☆189Feb 13, 2016Updated 10 years ago
- Reproducible Research in R for Ocean Biosciences: Open-science Training Seminar☆10Sep 27, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A package for simulating RNA-seq library preparation with parameter estimation☆23Mar 3, 2014Updated 12 years ago
- A R package to create a minimal template for scientific manuscripts in .docx☆11Jan 15, 2022Updated 4 years ago
- Examples used for useR! 2016 knitr tutorial☆15Jul 4, 2016Updated 10 years ago
- Flexible Integration of Data with Deep LEarning☆51Mar 24, 2023Updated 3 years ago
- ☆74Mar 1, 2019Updated 7 years ago
- [Historical] Reproducible Analyses for Bioinformatics☆106Mar 11, 2019Updated 7 years ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆123Nov 8, 2018Updated 7 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 2 months ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Jul 7, 2017Updated 9 years ago
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Jan 6, 2016Updated 10 years ago
- Efficient handling of FASTQ files from Python☆51Nov 28, 2025Updated 8 months ago
- Repository-based tools for reproducibilty at the system-wide installation and individual analysis levels for R☆24Jun 13, 2023Updated 3 years ago
- Deprecated☆101Aug 12, 2019Updated 6 years ago
- beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R☆14Dec 23, 2025Updated 7 months ago
- R package to catch insensitive, inconsiderate writing☆26Aug 17, 2021Updated 4 years ago
- Streaming sequence classification with web services ✓📌☆19Dec 8, 2022Updated 3 years ago
- Very very long reads, indeed☆13Apr 30, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Utility programs to trim or sort Illumina reads with adapter sequences☆15Jul 23, 2013Updated 13 years ago
- Generate Shakespearean Insults with R☆15Mar 27, 2017Updated 9 years ago
- ☆21Mar 20, 2017Updated 9 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆34Jan 7, 2020Updated 6 years ago
- A flexible python program for generating figures from regions of the genome.☆13Apr 6, 2019Updated 7 years ago
- A library of d3-based graphic panels, written in CoffeeScript☆27Jun 19, 2026Updated last month
- Flexible omics pipeline☆17Oct 16, 2025Updated 9 months ago