Alternatives and similar repositories for irelate

Users that are interested in irelate are comparing it to the libraries listed below

• brentp / bigly
  a pileup library that embraces the huge
  ☆43Updated 5 years ago
• jteutenberg / downpore
  Suite of tools for use in genome assembly and consensus. Work in progress.
  ☆31Updated 4 years ago
• pbenner / gonetics
  Go / Golang Bioinformatics Library
  ☆45Updated last year
• DecodeGenetics / BamHash
  ☆36Updated 5 years ago
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆85Updated 7 years ago
• brentp / indelope
  find large indels (in the blind spot between GATK/freebayes and SV callers)
  ☆39Updated 8 years ago
• ryanlayer / svv
  Stupid Simple Structural Variant View
  ☆25Updated 9 years ago
• quinlan-lab / vcf2db
  create a gemini-compatible database from a VCF
  ☆55Updated 5 years ago
• evoldoers / wtfgenes
  What's The Function of these genes?
  ☆22Updated 8 years ago
• genomics-dev / variantkey
  Numerical Encoding for Human Genetic Variants
  ☆42Updated 2 years ago
• percyfal / snakemakelib
  Snakemake library for bioinformatics programs, with a focus on next-generation sequencing
  ☆22Updated 9 years ago
• grailbio / bio
  Bioinformatic infrastructure libraries
  ☆78Updated 5 years ago
• minoTour / minoTour_archive
  Real time data analysis tools for the minION sequencing platform.
  ☆30Updated 3 years ago
• ryanlayer / ssshtest
  Stupid Simple (ba)Sh Testing - A functional software testing framwork
  ☆23Updated 2 years ago
• namsyvo / IVC
  Integrated Variant Caller
  ☆17Updated 7 years ago
• lh3 / bwa-docker
  Minimal docker image for bwa. Not developed any more.
  ☆11Updated 10 years ago
• johanneskoester / alpaca
  ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…
  ☆23Updated last year
• quinlan-lab / vcftidy
  normalize, left-align, trim, validate and clean VCF files
  ☆20Updated 10 years ago
• brentp / gsort
  sort genomic data
  ☆36Updated 2 months ago
• ga4gh / htsget
  Python client for GA4GH htsget protocol
  ☆15Updated 3 years ago
• alimanfoo / vcfnp
  Load numpy arrays and HDF5 files from VCF (variant call format)
  ☆31Updated 8 years ago
• shenwei356 / go4bio
  Golang for Bioinformatics
  ☆31Updated 9 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 6 years ago
• bioboxes / rfc
  Request for comments on interchangeable bioinformatics containers
  ☆39Updated 6 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆30Updated last year
• mklarqvist / tachyon
  High-level API for storing and querying sequence variant data
  ☆20Updated 6 years ago
• ekg / glia
  a string to graph aligner
  ☆41Updated 9 years ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆34Updated 2 years ago
• lganel / SVScore
  Prioritize structural variants based on CADD scores
  ☆29Updated 5 years ago
• brentp / hts-python
  pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)
  ☆49Updated 8 years ago