brentp / irelateLinks
Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang
☆47Updated 5 years ago
Alternatives and similar repositories for irelate
Users that are interested in irelate are comparing it to the libraries listed below
Sorting:
- a pileup library that embraces the huge☆43Updated 4 years ago
- ☆37Updated 4 years ago
- Python client for GA4GH htsget protocol☆15Updated 2 years ago
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Updated 4 years ago
- Numerical Encoding for Human Genetic Variants☆41Updated 2 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- Go / Golang Bioinformatics Library☆45Updated 9 months ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- Request for comments on interchangeable bioinformatics containers☆40Updated 6 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Updated 10 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 8 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Updated 9 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 7 years ago
- Bioinformatic infrastructure libraries☆79Updated 4 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 5 months ago
- ☆27Updated 8 years ago
- Stupid Simple (ba)Sh Testing - A functional software testing framwork☆23Updated last year
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- sort genomic data☆36Updated 5 years ago
- Minimal docker image for bwa. Not developed any more.☆11Updated 10 years ago
- Histosketching Using Little Kmers☆57Updated 2 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆58Updated last year
- Index and query k-mer matrices in BGZF☆12Updated 7 years ago
- Simple matching of HTS samples based on HLA typing☆13Updated 8 years ago