brentp / irelateLinks
Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang
☆47Updated 5 years ago
Alternatives and similar repositories for irelate
Users that are interested in irelate are comparing it to the libraries listed below
Sorting:
- a pileup library that embraces the huge☆43Updated 5 years ago
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Updated 4 years ago
- ☆36Updated 5 years ago
- ☆28Updated 8 years ago
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- Load numpy arrays and HDF5 files from VCF (variant call format)☆31Updated 8 years ago
- Python client for GA4GH htsget protocol☆15Updated 3 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- Go / Golang Bioinformatics Library☆45Updated last year
- Numerical Encoding for Human Genetic Variants☆42Updated 2 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- SV detection from paired end reads mapping☆38Updated 15 years ago
- create a gemini-compatible database from a VCF☆55Updated 4 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- Bioinformatic infrastructure libraries☆78Updated 5 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Fast but inaccurate adapter trimmer for Illumina reads☆16Updated 3 years ago
- Request for comments on interchangeable bioinformatics containers☆39Updated 6 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 8 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Updated 4 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆58Updated 2 years ago
- R tools to interact with hap.py output☆16Updated 6 years ago
- full taxonomer cython repository☆22Updated 6 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Updated 10 years ago
- sort genomic data☆36Updated last month
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated last week