Provides access to complex Bioinformatics software (even BioLinux!) in just one command.
☆75Jun 28, 2017Updated 8 years ago
Alternatives and similar repositories for oswitch
Users that are interested in oswitch are comparing it to the libraries listed below
Sorting:
- A web wrapper for GeneValidator☆11Feb 12, 2021Updated 5 years ago
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 10 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 10 years ago
- Pipeline for poreathon☆14Dec 17, 2014Updated 11 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- GeneValidator: Identify problems with predicted genes☆49Mar 1, 2024Updated 2 years ago
- Request for comments on interchangeable bioinformatics containers☆39Jun 18, 2019Updated 6 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- ☆12Feb 19, 2017Updated 9 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Oct 8, 2021Updated 4 years ago
- A pipeline to assess the quantification of transcripts.☆19Jun 6, 2022Updated 3 years ago
- [Historical] Reproducible Analyses for Bioinformatics☆106Mar 11, 2019Updated 6 years ago
- Reproducible Phylogenomics☆22Jun 28, 2016Updated 9 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Aug 23, 2019Updated 6 years ago
- Stupid Simple Structural Variant View☆25Nov 21, 2016Updated 9 years ago
- Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)☆297Nov 14, 2025Updated 3 months ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated last year
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- A tool for running bioinformatics workflows locally or in the cloud.☆30Dec 13, 2019Updated 6 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Mar 17, 2016Updated 9 years ago
- [Bio in Docker] Symposium 2015☆21Sep 26, 2017Updated 8 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Jul 7, 2017Updated 8 years ago
- Build components for CloudMan, Galaxy on the Cloud, or Galaxy Server☆20Jun 27, 2017Updated 8 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Nov 30, 2020Updated 5 years ago
- Text Only Genome Viewer!☆233Updated this week
- ☆43Apr 20, 2016Updated 9 years ago
- Efficient handling of FASTQ files from Python☆51Nov 28, 2025Updated 3 months ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Sep 16, 2021Updated 4 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Apr 29, 2025Updated 10 months ago
- Integrative visualization of multiple omic datasets onto KEGG pathways.☆11Oct 4, 2021Updated 4 years ago
- ☆10Apr 20, 2018Updated 7 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆86Jul 10, 2017Updated 8 years ago
- Modular and universal bioinformatics☆313Nov 19, 2019Updated 6 years ago
- simple jobs submission via command-line for AWS batch☆80May 21, 2019Updated 6 years ago
- ☆36Aug 13, 2020Updated 5 years ago
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆146Feb 17, 2026Updated 2 weeks ago
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated 6 months ago
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…☆11May 5, 2020Updated 5 years ago