Provides access to complex Bioinformatics software (even BioLinux!) in just one command.
☆75Jun 28, 2017Updated 9 years ago
Alternatives and similar repositories for oswitch
Users that are interested in oswitch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A web wrapper for GeneValidator☆11Feb 12, 2021Updated 5 years ago
- GeneValidator: Identify problems with predicted genes☆49Mar 1, 2024Updated 2 years ago
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 11 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 11 years ago
- Biopsy - the Bioinformatic Optimisation System☆16Nov 1, 2015Updated 10 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)☆299May 11, 2026Updated 3 months ago
- Request for comments on interchangeable bioinformatics containers☆39Jun 18, 2019Updated 7 years ago
- ☆12Feb 19, 2017Updated 9 years ago
- Modular and universal bioinformatics☆313May 18, 2026Updated 3 months ago
- Automated optimisation of de-novo transcriptome assembly☆25Nov 11, 2015Updated 10 years ago
- ☆43Apr 20, 2016Updated 10 years ago
- Pipeline for poreathon☆14Dec 17, 2014Updated 11 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Mar 3, 2017Updated 9 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Aug 23, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- A package for simulating RNA-seq library preparation with parameter estimation☆23Mar 3, 2014Updated 12 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 5 years ago
- Reproducible Phylogenomics☆22Jun 28, 2016Updated 10 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 3 months ago
- [Historical] Reproducible Analyses for Bioinformatics☆107Mar 11, 2019Updated 7 years ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆123Nov 8, 2018Updated 7 years ago
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 8 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Mar 17, 2016Updated 10 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A small library for ranges/intervals, for use with genomic data.☆17Nov 27, 2012Updated 13 years ago
- [Bio in Docker] Symposium 2015☆21Sep 26, 2017Updated 8 years ago
- Build components for CloudMan, Galaxy on the Cloud, or Galaxy Server☆20Jun 27, 2017Updated 9 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50May 8, 2026Updated 3 months ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Sep 16, 2021Updated 4 years ago
- sort genomic data☆36Nov 7, 2025Updated 9 months ago
- ☆18Nov 16, 2015Updated 10 years ago
- Concordance between variant callers☆17Nov 27, 2014Updated 11 years ago
- Manipulate FASTA files☆29Aug 26, 2014Updated 12 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆32Jan 22, 2016Updated 10 years ago
- A configurable de novo assembly pipeline☆30Jun 29, 2016Updated 10 years ago
- ☆36Aug 13, 2020Updated 6 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- Same species annotation lift over pipeline.☆99Jul 21, 2023Updated 3 years ago
- A pipeline to assess the quantification of transcripts.☆19Jun 6, 2022Updated 4 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Oct 5, 2015Updated 10 years ago