wurmlab / oswitchLinks
Provides access to complex Bioinformatics software (even BioLinux!) in just one command.
☆76Updated 7 years ago
Alternatives and similar repositories for oswitch
Users that are interested in oswitch are comparing it to the libraries listed below
Sorting:
- [Historical] Reproducible Analyses for Bioinformatics☆106Updated 6 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Updated 9 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated last month
- A collection of well-known bioinformatics programs.☆25Updated 10 years ago
- ☆30Updated 8 years ago
- A web wrapper for GeneValidator☆11Updated 4 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- a wee tool for random access into BGZF files.☆84Updated 7 years ago
- Request for comments on interchangeable bioinformatics containers☆40Updated 5 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆87Updated 7 years ago
- chitin: an awful shell for awful bioinformaticians☆61Updated 5 years ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆30Updated 9 years ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆83Updated 8 months ago
- Understand your transcriptome assembly☆102Updated last year
- Retrieve data in genomic intervals with a Python interface for tabix.☆82Updated 7 years ago
- A WGS de novo assembler based on the FMD-index for large genomes☆74Updated 11 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated 2 years ago
- CRAM format specification and java API for read data.☆60Updated 6 years ago
- ☆36Updated last month
- Docker images of bioinformatics software☆21Updated 7 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated 2 weeks ago
- SVG based genome viewer written in javascript using D3☆33Updated 9 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- An Oxford Nanopore Basecaller☆71Updated 3 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆85Updated 6 years ago