lh3 / fermikitLinks
De novo assembly based variant calling pipeline for Illumina short reads
☆108Updated 4 years ago
Alternatives and similar repositories for fermikit
Users that are interested in fermikit are comparing it to the libraries listed below
Sorting:
- Tools for early stage alignment file processing☆95Updated 6 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Updated 6 years ago
- High-performance error correction for Illumina resequencing data☆73Updated 9 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 7 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year
- Assembly Based ReAligner☆74Updated 7 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆137Updated 2 months ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 2 years ago
- NEAT read simulation tools☆99Updated 3 years ago
- An awk-like VCF parser☆56Updated last year
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- Platypus Variant Caller☆108Updated last year
- LoFreq Star: Sensitive variant calling from sequencing data☆107Updated 3 years ago
- A powerful toolset for genome arithmetic.☆142Updated 4 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆89Updated 5 years ago
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago
- Structural Variant Index☆75Updated 9 months ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- ☆91Updated 3 years ago
- ☆95Updated 2 years ago
- ☆78Updated 11 years ago
- A program to detect denovo-variants using next-generation sequencing data.☆52Updated 5 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆90Updated 4 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 8 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago