lh3 / fermikitLinks
De novo assembly based variant calling pipeline for Illumina short reads
☆108Updated 4 years ago
Alternatives and similar repositories for fermikit
Users that are interested in fermikit are comparing it to the libraries listed below
Sorting:
- Flexible genotype query among 30,000+ samples whole-genome☆95Updated 5 years ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- High-performance error correction for Illumina resequencing data☆72Updated 9 years ago
- Read visualizer for structural variants☆84Updated 6 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆89Updated 5 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆71Updated 7 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆78Updated last year
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- NEAT read simulation tools☆98Updated 3 years ago
- This repository contains information about latest release from Genome in a Bottle project☆74Updated 5 years ago
- ☆95Updated 2 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆85Updated 9 months ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆137Updated 2 weeks ago
- An awk-like VCF parser☆56Updated last year
- Microassembly based somatic variant caller for NGS data☆155Updated 3 years ago
- Data and information about the Polaris study☆53Updated 5 years ago
- ☆54Updated 5 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆97Updated last year
- NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…☆87Updated 6 years ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆163Updated last year
- Small utilities for working with fastq sequence files.☆124Updated 2 years ago
- Platypus Variant Caller☆108Updated last year
- LoFreq Star: Sensitive variant calling from sequencing data☆105Updated 2 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆87Updated 8 years ago