lh3 / fermikitLinks
De novo assembly based variant calling pipeline for Illumina short reads
☆110Updated 5 years ago
Alternatives and similar repositories for fermikit
Users that are interested in fermikit are comparing it to the libraries listed below
Sorting:
- Tools for early stage alignment file processing☆95Updated 6 years ago
- High-performance error correction for Illumina resequencing data☆73Updated 9 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Updated 6 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 7 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Updated 5 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- ☆96Updated 3 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆90Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago
- NEAT read simulation tools☆101Updated 3 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆86Updated 8 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 4 years ago
- An awk-like VCF parser☆56Updated last year
- Scallop is a reference-based transcriptome assembler for RNA-seq☆91Updated 4 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆108Updated last month
- A powerful toolset for genome arithmetic.☆142Updated 4 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- Platypus Variant Caller☆108Updated last year
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆138Updated 2 months ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- ☆55Updated 5 years ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆171Updated last year
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Thousand Variant Callers Project Repository☆74Updated 6 years ago
- Bayesian genotyper for structural variants☆136Updated 4 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Updated 7 months ago