gofflab / developing_mouse_retina_scRNASeqLinks
10x single cell RNA-seq data from the developing mouse retina
☆16Updated 4 years ago
Alternatives and similar repositories for developing_mouse_retina_scRNASeq
Users that are interested in developing_mouse_retina_scRNASeq are comparing it to the libraries listed below
Sorting:
- Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)☆24Updated 6 years ago
- scWGCNA☆61Updated 3 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 4 years ago
- ☆56Updated 5 years ago
- ☆59Updated last year
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆76Updated 2 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- ☆25Updated 5 months ago
- ☆34Updated 6 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Updated 5 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆46Updated 9 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated last month
- scRNA-seq cell type identification☆43Updated 6 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Updated 2 years ago
- ☆62Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 6 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆28Updated 5 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- Clone of the Bioconductor repository for the scran package.☆46Updated last year
- ☆48Updated last year
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Single-cell Case Control Analysis☆52Updated this week
- Capybara: A computational tool to measure cell identity and fate transitions☆60Updated 3 years ago
- ☆30Updated 4 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Updated 2 months ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago