blachlylab / mucor
☆12Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for mucor
- Novel Adjacency Identification with Barcoded Reads☆13Updated 2 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 6 years ago
- Graphical assessment of structrial variants using 10x genomics data☆10Updated 7 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 5 years ago
- An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data☆14Updated 6 years ago
- Stupid Simple Structural Variant View☆25Updated 7 years ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 4 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 8 months ago
- Seqnature: incorporate SNPs and Indels into a reference genome☆15Updated 8 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 7 years ago
- What's The Function of these genes?☆23Updated 7 years ago
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Updated 8 years ago
- Hemang Parikh☆11Updated 8 years ago
- Copy number estimation of highly duplicated sequences☆10Updated 7 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Updated 7 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Updated 3 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Updated 5 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 8 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Updated 8 years ago
- commandline manipulation of genomic variants and NGS reads☆19Updated 2 months ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆13Updated 5 years ago
- Color DNA/RNA bases in terminal output☆20Updated 7 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- The OpEx (Optimised Exome) pipeline☆9Updated 6 years ago
- ☆13Updated 7 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 7 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Updated 6 years ago