Rapid and robust analysis of RNA-Seq experiments.
☆32Apr 16, 2016Updated 9 years ago
Alternatives and similar repositories for isolator
Users that are interested in isolator are comparing it to the libraries listed below
Sorting:
- Unix-based RNA-seq quantification pipeline☆10Nov 18, 2015Updated 10 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 2 months ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated last year
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Apr 30, 2021Updated 4 years ago
- ☆14Feb 19, 2026Updated last week
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- Response to blog post about Salmon☆37Sep 3, 2017Updated 8 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- ☆21Dec 26, 2025Updated 2 months ago
- Automated optimisation of de-novo transcriptome assembly☆25Nov 11, 2015Updated 10 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Jun 6, 2019Updated 6 years ago
- Parallel Construction of Suffix Arrays in Rust☆26May 2, 2025Updated 9 months ago
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆10May 29, 2017Updated 8 years ago
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 8 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- blast, shmlast☆21Oct 5, 2020Updated 5 years ago
- ☆14Sep 11, 2023Updated 2 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 6 years ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- Squeakr: An Exact and Approximate k -mer Counting System☆86Feb 23, 2025Updated last year
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- A small R package to make sequencing read coverage plots in R.☆40Dec 30, 2025Updated 2 months ago
- MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provi…☆14Aug 9, 2019Updated 6 years ago
- ☆13Jan 8, 2020Updated 6 years ago
- Examples of kallisto + sleuth☆11May 18, 2017Updated 8 years ago
- ☆73Mar 1, 2019Updated 7 years ago
- A web based tool to manage and automate the processing of publicly available datasets.☆39Mar 16, 2021Updated 4 years ago
- Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline☆13Dec 2, 2025Updated 3 months ago
- beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R☆14Dec 23, 2025Updated 2 months ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- FAstqc DAta PArser - A minimal parser to parse FastQC output data.☆16Apr 9, 2016Updated 9 years ago
- ☆15Jul 20, 2022Updated 3 years ago
- Population genetics analysis on VG☆17Apr 22, 2021Updated 4 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Jun 17, 2022Updated 3 years ago
- GBZ file format for pangenome graphs☆46Feb 18, 2026Updated last week
- A graph aligner☆30Sep 17, 2024Updated last year
- RNA-Seq☆24Aug 29, 2018Updated 7 years ago
- Compacted and colored de Bruijn graph construction and querying☆92Updated this week
- R package for analyzing single-cell RNA-seq data☆179Feb 29, 2024Updated 2 years ago