Rapid and robust analysis of RNA-Seq experiments.
☆32Apr 16, 2016Updated 10 years ago
Alternatives and similar repositories for isolator
Users that are interested in isolator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- Response to blog post about Salmon☆37Sep 3, 2017Updated 8 years ago
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆10May 29, 2017Updated 9 years ago
- ☆15May 22, 2026Updated 3 weeks ago
- ☆13Apr 14, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆15Jul 20, 2022Updated 3 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆41Jun 6, 2019Updated 7 years ago
- Unix-based RNA-seq quantification pipeline☆10Nov 18, 2015Updated 10 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 6 months ago
- ☆21Dec 26, 2025Updated 5 months ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆94Apr 30, 2021Updated 5 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- Automated optimisation of de-novo transcriptome assembly☆25Nov 11, 2015Updated 10 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- blast, shmlast☆21Oct 5, 2020Updated 5 years ago
- Parallel Construction of Suffix Arrays in Rust☆26May 2, 2025Updated last year
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 7 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Aug 8, 2024Updated last year
- ☆74Mar 1, 2019Updated 7 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆86Feb 23, 2025Updated last year
- RNA-Seq☆24Aug 29, 2018Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago
- Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.☆83Dec 10, 2020Updated 5 years ago
- Flexible Integration of Data with Deep LEarning☆51Mar 24, 2023Updated 3 years ago
- MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provi…☆14Aug 9, 2019Updated 6 years ago
- Enriched Domain Detector for ChIP-seq data☆16Aug 17, 2022Updated 3 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆25Apr 21, 2021Updated 5 years ago
- R package for analyzing single-cell RNA-seq data☆180Feb 29, 2024Updated 2 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Apr 12, 2024Updated 2 years ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- GBZ file format for pangenome graphs☆46Apr 18, 2026Updated last month
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆33Jun 3, 2022Updated 4 years ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 4 months ago
- A graph aligner☆31Sep 17, 2024Updated last year
- ☆20Aug 18, 2020Updated 5 years ago
- ☆21Jul 12, 2016Updated 9 years ago
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Dec 7, 2017Updated 8 years ago